Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g22990.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000000:5346178...5351341
NR annotation: XP_027040536.1, general transcription factor IIF subunit 2-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q8R0A0	General transcription factor IIF subunit 2 OS=Mus musculus OX=10090 GN=Gtf2f2 PE=1 SV=1
Q01750	General transcription factor IIF subunit 2 OS=Rattus norvegicus OX=10116 GN=Gtf2f2 PE=1 SV=1
Q2T9L9	General transcription factor IIF subunit 2 OS=Bos taurus OX=9913 GN=GTF2F2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02270	TFIIF_beta	TFIIF, beta subunit HTH domain	Domain	Interproscan
PF17683	TFIIF_beta_N	TFIIF, beta subunit N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040450	Domain	TFIIF beta subunit, HTH domain	Interproscan
IPR011039	Homologous_superfamily	Transcription Factor IIF, Rap30/Rap74, interaction	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR040504	Domain	TFIIF, beta subunit, N-terminal	Interproscan
IPR003196	Family	Transcription initiation factor IIF, beta subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10445	GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006367	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0005674	Cellular Component	transcription factor TFIIF complex	Interproscan
GO:0006366	Biological Process	transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03139	TFIIF2, GTF2F2, TFG2; transcription initiation factor TFIIF subunit beta	EC:5.6.2.-	Transcription machinery	ko03021	deepkoala