Genomic Location: Pocillopora_acuta_HIv2___xfSc0000000:7602592...7648555
NR annotation: XP_027044472.1, structural maintenance of chromosomes protein 4-like [Pocillopora damicornis]
| CDS | |||||
| Pocillopora_acuta_HIv2___RNAseq.g23149.t2 | |||||
| Transcript |
| Pocillopora_acuta_HIv2___RNAseq.g23149.t2 |
| Protein |
| Pocillopora_acuta_HIv2___RNAseq.g23149.t2 |
| Uniprot term | Description |
|---|---|
| Q8CG47 | Structural maintenance of chromosomes protein 4 OS=Mus musculus OX=10090 GN=Smc4 PE=1 SV=1 |
| Q9ERA5 | Structural maintenance of chromosomes protein 4 (Fragment) OS=Microtus arvalis OX=47230 GN=SMC4 PE=2 SV=1 |
| P50532 | Structural maintenance of chromosomes protein 4 OS=Xenopus laevis OX=8355 GN=smc4 PE=1 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02463 | SMC_N | RecF/RecN/SMC N terminal domain | Domain | Interproscan |
| PF13843 | DDE_Tnp_1_7 | Transposase IS4 | Domain | Interproscan |
| PF06470 | SMC_hinge | SMC proteins Flexible Hinge Domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003395 | Domain | RecF/RecN/SMC, N-terminal | Interproscan |
| IPR029526 | Domain | PiggyBac transposable element-derived protein | Interproscan |
| IPR010935 | Domain | SMCs flexible hinge | Interproscan |
| IPR027417 | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR024704 | Family | Structural maintenance of chromosomes protein | Interproscan |
| IPR036277 | Homologous_superfamily | SMCs flexible hinge superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR18937 | STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0005524 | Molecular Function | ATP binding | Interproscan |
| GO:0005694 | Cellular Component | chromosome | Interproscan |
| GO:0051276 | Biological Process | chromosome organization | Interproscan |
| GO:0016887 | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0000799 | Cellular Component | condensin complex | Interproscan |
| GO:0007076 | Biological Process | mitotic chromosome condensation | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K06675 | SMC4; structural maintenance of chromosome 4 | - | Chromosome and associated proteins | ko03036 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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