Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g23410.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000000:12594519...12600115
NR annotation: XP_027049918.1, nuclear receptor subfamily 2 group E member 1-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q9TTF0	Photoreceptor-specific nuclear receptor OS=Bos taurus OX=9913 GN=NR2E3 PE=1 SV=2
Q9Y5X4	Photoreceptor-specific nuclear receptor OS=Homo sapiens OX=9606 GN=NR2E3 PE=1 SV=1
Q91379	Nuclear receptor subfamily 2 group E member 1 OS=Gallus gallus OX=9031 GN=NR2E1 PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	ESR-like
Transcription Factors Family	Miscellaneous
Transcription Factors Family	NGFIB-like
Transcription Factors Family	RXR-like
Transcription Factors Family	SF-like
Transcription Factors Family	THR-like
Transcription Factors Family	GCNF-like

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00104	Hormone_recep	Ligand-binding domain of nuclear hormone receptor	Domain	Interproscan
PF00105	zf-C4	Zinc finger, C4 type (two domains)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000536	Domain	Nuclear hormone receptor, ligand-binding domain	Interproscan
IPR035500	Homologous_superfamily	Nuclear hormone receptor-like domain superfamily	Interproscan
IPR001628	Domain	Zinc finger, nuclear hormone receptor-type	Interproscan
IPR001723	Family	Nuclear hormone receptor	Interproscan
IPR050274	Family	Nuclear hormone receptor family NR2 subfamily	Interproscan
IPR013088	Homologous_superfamily	Zinc finger, NHR/GATA-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24083	NUCLEAR HORMONE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0004879	Molecular Function	nuclear receptor activity	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan
GO:0048856	Biological Process	anatomical structure development	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08546	NR2E3, PNR; nuclear receptor subfamily 2 group E member 3	-	Nuclear receptors	ko03310	deepkoala