Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g2401.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000025:1185562...1191135
NR annotation: XP_027043239.1, uncharacterized protein LOC113671232 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q9WYJ1	L-threonine ammonia-lyase OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=TM_0356 PE=1 SV=1
Q74FW6	L-threonine ammonia-lyase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) OX=243231 GN=tdcB PE=1 SV=1
P0AGF8	L-threonine dehydratase catabolic TdcB OS=Escherichia coli O157:H7 OX=83334 GN=tdcB PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00291	PALP	Pyridoxal-phosphate dependent enzyme	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050147	Family	Serine/Threonine Dehydratase	Interproscan
IPR036052	Homologous_superfamily	Tryptophan synthase beta chain-like, PALP domain superfamily	Interproscan
IPR001926	Domain	Tryptophan synthase beta chain-like, PALP domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48078	THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003941	Molecular Function	L-serine ammonia-lyase activity	Interproscan
GO:0004794	Molecular Function	threonine deaminase activity	Interproscan
GO:0006565	Biological Process	L-serine catabolic process	Interproscan
GO:0006567	Biological Process	threonine catabolic process	Interproscan
GO:0009097	Biological Process	isoleucine biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01754	E4.3.1.19, ilvA, tdcB; threonine dehydratase	EC:4.3.1.19	Valine, leucine and isoleucine biosynthesis	ko00290	deepkoala