Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g24686.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000002:567727...599308
NR annotation: CAH3128863.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___RNAseq.g24686.t1

ATGAAGACAAGATTTACCACCGTTGATCTTTGCGCGGTGATCACAGAGCTAAGAGGAAGCCTCCTTGGCATGAGGGTGGCCAATGTATATGACATCGATAACAAGACCTATCTGATCAGACTTGGAAAGACTGATGTTAAAGTCATGTTACTGGTAGAATCTGGTAACAGAATAAATACAACAGAATTTGAGTGGCCCAAGAATATGATGCCATCTGGATTTTCAATGAAGTGTCGTAAACATATTCGTTCCCGGAGGCTTGTGAACATCAGTCAATTGGGAATTGATCGGATTGTTGATTTACAGTTTGGCTCAGATGAGGCAGCTTATCATCTGATTGTGGAACTTTATGACAGGGGCAATATTTTTCTCACTGATTACGAATACACAATCCTGAGTCTTCTAAGAACAAGAACAGATGCTGATGATGTCAAATTTGCTGTGCGTGAAAAATACCCAGTAAATTCTGCCCGACAGAGGGAGCCATTAATGAACCAAGAAAGGGTATGTGAAATTTTATCAGAAAGCAAGGAAGGAGTAGAAGTAAAGAAGGTTTTAAATCCACATTTTGTGTATGGTGCTGCTCTGATAGAACATTGCCTTATGGAAGTAGGGTTCCCTGAAAATGTCAAGATTGGAAAAGGATTTAATGTAGCAGAAGATCTTCCTGAAGTTATGGAGGCATTAAGGAAAGCTGAAAGTTTTTTGGAAATGACACTCACAGAGAAATGCAATGGAGTTATTGTTCAAAAAAAGGAACAGAAACCATCAAACAATAAGAGCAATGGCACAGATCAGGATGAACTGCTAACATATCAAGAATTTTACCCATTCTTACTCAATCAACACAAGAAAAGTCCATATCTGGAGTTTCCATCATTTGACAAGGCAGTGGATGAGTTCTTCTCAAAAATTGAAAGCCAGAAAATTGACATGAAGGCTCTGTCTCAGGAAAAGACGGCACTGAAGAAGTTAGAAAATATCCGAAAAGATCACCAAAGAAGAATTGACTCGCTGCAAAAGTCTCAGGATGTAGACATGTTAAGAGCAGAGCTTGTGGAGTTAAACCTACCATTGGTGGAAAAAGCAATCCTGATTGTGAACAGCGCCATCGCAAACCAGATTGACTGGTCTGAAATCAACAACATCGTTAAAGAGGCACAGTCACAAGGGGACCCAGTGGCTTGTGCTATTGGTGCATTGAAACTGGAAACTAATCATATCAGCATGCATCTCAGGAATCCGTATGACTCTTCAGAATCAGACCCTGGTTCAGATGAAGAAGATGATGATGAAAGTGCAAAAAATAAAAAGAAGAAAAAAACAAAGGGTCCTAAATTTACTAAAATTGACATCAACTTGGCTTTGTCTGCATACGCGAATGCAAGAAGCTTTTATGATAAGAAAAAATTTTCCTCAAAAAAGGAACAAAAGACAATTGATGCTTCGGAGAAGGCGTTAAAATCAGCGGAGCGAAAAACGAAGGAAACCCTGAAAGAAGTTGAGACTACTACAAGAATCAAGAAAGCACGGAAAACATACTGGTTTGAGAAGTTTCTTTGGTTTATCAGTTCTGAGAATTACTTGGTAATTGGTGGCCGAGACCAACAGCAGAATGAACTTGTGGTGAAACGACATCTAGAACAAGGTGACGTGTACGTTCACGCGGATCTCCATGGTGCCACAAGTGTTATAATAAAGAACCCCACGGGTCAGCCCGTCCCGCCAAAGACCCTTAATGAAGCCGGTTGCATGGCGGTGTCCTACAGTGCTGCATGGGAGGCACGGATTGTGACCTCAGCCTGGTGGGTACATCATTCGCAGGTGTCCAAGACGGCACCCTCAGGAGAGTACCTAACCACGGGAAGCTTCATGATAAGGGGCAAGAAGAACTTCTTGCCGCCATGTTACCTTATGATGGGCTTTGGTTTTCTGTTTAAATTGGATGAAACGTCCATCGAAAATCATTTGAACGAGAGAAAAGTCAGGGCTGTTGAAGATACTGAATTAGTTGAGGATGCTGAAGGAGACGAAGAGCTGAGCATTCCAAGCGACGAAGGTGAGGAAGAAAATCCACCGAATTCTGCCGTCGAAGGGGTAGCTACTCTGGAAGAAGATGATGAGGAAGATAGCTTGTTTCCTGATACAAGCATCGATATACAGCTTACGAAGGAGGGAAAAGTACAGCTTCAGCGTGGAACGAGTAGAAGCAACAGCCGAAGAGATAGCGAAGAAGGAGAAACTGTTGCCCCTGAGGAAAGCAAACAGCTCACAAACAAGCAACGTCTATCGGCGAAACAGAGGAGAGAGAATCGGAAGAAGAAGGCCAGGCAAGGTGAAGACGGCCTTTTGCAGGAGAATGACGAGGAAGAGCAAGAAATAGAACAAGGAGAAGAATGTGAGCAGACGAGCAAGAAATCTGAACAAAACCATCAGCAAAAACAAAAACAACAACAGCAGCAGCAGCCACCTAAGAGAGGACAAAAGACAAAACTTAAGAAAATCAAAGAGAAGTACGGCGAACAGGATGAAGAGGAACGACAAATGAAAATGGAGATTTTAGCGTCTGCTGGGCCTTCAAAAGAGAGCAAAGCTGATAAGAGGAAAAAAGACAAGAAAGCGGGCAAAGGAAGTGGCGCCAACAGGCCAGTCAGCGGTAAATTGGGGAGAAGGGAAACCCAGACAAGCAAAGGCCAATACCAAAATCAGAATAATCCATGTGCACCAGAAGGCGGTAAAAGCCGAGATCAGGACAATATCTTCCAGCCTAAACAGAATATGGACGAAAACAAAGGCAGCAAAACAAACTGTACAAATCAAAATTCAAGCGTCAGTCAGGAGAGAGGCGATAGAAAGAAAGACGATATTGACAGTGAAGAGACGGCGAACGATTTGGTTAACTCTTCTGATAAACACACTGATGAAGCAAGCAATTTGGAACCGGACAGTGTAGAGGATAATTCCTCCAAAGAGGGAATTTCAAAGGATGAAGGTGCGAATTATGTCACACCTGAGAAAGAAAAGGACATTGCTGAATCAGATGACGAAGCAGAAGACGTAACTCCGAAAGAAGCTGTATCACTGCTTGATTCTCTGACAGGGTGTCCAATCTCTGAAGATTTACTGCTGTTTGCAATTCCCGTCTGTGCTCCCTACGGTGCCGTACAAAACTACAAATTTAAAGTAAAACTTACACCAGGAACAGCTCGTCGAGGAAAAGCTGCCAAGACGGCGTTGAGCACATTTCTCTTTTCCAAAGAAGCTTCTCAGCTAGAGAAAGATTTGATTAAAAGTCTCAAGGACAACGATCTTTCGCGTTACATTCCAGGAAAAGTGAAAGTTTCAGCACCAAACCTTCAGAAAAAGAAGAAGAAATAA

Transcript

Pocillopora_acuta_HIv2___RNAseq.g24686.t1

Protein

Uniprot

Uniprot term	Description
Q8CCP0	Ribosome quality control complex subunit NEMF OS=Mus musculus OX=10090 GN=Nemf PE=1 SV=2
O60524	Ribosome quality control complex subunit NEMF OS=Homo sapiens OX=9606 GN=NEMF PE=1 SV=4
Q9VBX1	Ribosome quality control complex subunit NEMF homolog OS=Drosophila melanogaster OX=7227 GN=Clbn PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05670	NFACT-R_1	NFACT protein RNA binding domain	Domain	Interproscan
PF05833	NFACT_N	NFACT N-terminal and middle domains	Family	Interproscan
PF11923	NFACT-C	NFACT protein C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008532	Domain	NFACT, RNA-binding domain	Interproscan
IPR051608	Family	Ribosome Quality Control Complex Subunit NEMF	Interproscan
IPR021846	Domain	NFACT protein, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15239	NUCLEAR EXPORT MEDIATOR FACTOR NEMF	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000049	Molecular Function	tRNA binding	Interproscan
GO:0043023	Molecular Function	ribosomal large subunit binding	Interproscan
GO:0072344	Biological Process	rescue of stalled ribosome	Interproscan
GO:1990112	Cellular Component	RQC complex	Interproscan
GO:1990116	Biological Process	ribosome-associated ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24971	NEMF, RQC2; nuclear export mediator factor NEMF	-	Ribosome biogenesis	ko03009	deepkoala