Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g24898.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000002:2775199...2779318
NR annotation: XP_027052562.1, stromelysin-1-like isoform X2 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P08254	Stromelysin-1 OS=Homo sapiens OX=9606 GN=MMP3 PE=1 SV=2
O55123	Stromelysin-2 OS=Mus musculus OX=10090 GN=Mmp10 PE=2 SV=1
P28862	Stromelysin-1 OS=Mus musculus OX=10090 GN=Mmp3 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00045	Hemopexin	Hemopexin	Repeat	Interproscan
PF00413	Peptidase_M10	Matrixin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018487	Repeat	Hemopexin-like repeats	Interproscan
IPR036375	Homologous_superfamily	Hemopexin-like domain superfamily	Interproscan
IPR021190	Family	Peptidase M10A	Interproscan
IPR024079	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR006026	Domain	Peptidase, metallopeptidase	Interproscan
IPR033739	Domain	Peptidase M10A, catalytic domain	Interproscan
IPR036365	Homologous_superfamily	PGBD-like superfamily	Interproscan
IPR001818	Domain	Peptidase M10, metallopeptidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10201	MATRIX METALLOPROTEINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan
GO:0030198	Biological Process	extracellular matrix organization	Interproscan
GO:0030574	Biological Process	collagen catabolic process	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan