Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g25184.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000002:5773458...5784954
NR annotation: CAH3159948.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|U-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02176	zf-TRAF	TRAF-type zinc finger	Family	Interproscan
PF01302	CAP_GLY	CAP-Gly domain	Domain	Interproscan
PF13923	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR000938	Domain	CAP Gly-rich domain	Interproscan
IPR036859	Homologous_superfamily	CAP Gly-rich domain superfamily	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0033209	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0070534	Biological Process	protein K63-linked ubiquitination	Interproscan