Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g25189.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000002:5851396...5856528
NR annotation: XP_027036280.1, TNF receptor-associated factor 5-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P70191	TNF receptor-associated factor 5 OS=Mus musculus OX=10090 GN=Traf5 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01302	CAP_GLY	CAP-Gly domain	Domain	Interproscan
PF21363	TRAF3_RING	TNF receptor-associated factor 2/3/5, RING domain	Domain	Interproscan
PF02176	zf-TRAF	TRAF-type zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR000938	Domain	CAP Gly-rich domain	Interproscan
IPR049440	Domain	TNF receptor-associated factor 3/5, RING domain	Interproscan
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan
IPR036859	Homologous_superfamily	CAP Gly-rich domain superfamily	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0033209	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0070534	Biological Process	protein K63-linked ubiquitination	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan