Detailed information of Pocillopora_acuta_HIv2___RNAseq.g25456.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000002:9323133...9368780
NR annotation: XP_027055638.1, fibrillin-1-like [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A1Z877Nidogen OS=Drosophila melanogaster OX=7227 GN=Ndg PE=1 SV=1
P98158Low-density lipoprotein receptor-related protein 2 OS=Rattus norvegicus OX=10116 GN=Lrp2 PE=1 SV=1
P98164Low-density lipoprotein receptor-related protein 2 OS=Homo sapiens OX=9606 GN=LRP2 PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06119NIDONidogen-likeFamilyInterproscan
PF07645EGF_CACalcium-binding EGF domainDomainInterproscan
PF00754F5_F8_type_CF5/8 type C domainDomainInterproscan
PF12661hEGFHuman growth factor-like EGFDomainInterproscan
PF07474G2FG2F domainDomainInterproscan
PF12947EGF_3EGF domainDomainInterproscan
PF00058Ldl_recept_bLow-density lipoprotein receptor repeat class BRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000742DomainEGF-like domainInterproscan
IPR000033RepeatLDLR class B repeatInterproscan
IPR006605DomainG2 nidogen/fibulin G2FInterproscan
IPR000152PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR003886DomainNIDO domainInterproscan
IPR009017Homologous_superfamilyGreen fluorescent proteinInterproscan
IPR011042Homologous_superfamilySix-bladed beta-propeller, TolB-likeInterproscan
IPR049883DomainNOTCH1 EGF-like calcium-binding domainInterproscan
IPR009030Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR000421DomainCoagulation factor 5/8 C-terminal domainInterproscan
IPR013032Conserved_siteEGF-like, conserved siteInterproscan
IPR008979Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR002889DomainCarbohydrate-binding WSCInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR003645DomainFollistatin-like, N-terminalInterproscan
IPR024731DomainEGF domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24039FIBRILLIN-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0007160Biological Processcell-matrix adhesionInterproscan

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