Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g25699.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000008:1112565...1122227
NR annotation: XP_027038466.1, L-gulonolactone oxidase-like [Pocillopora damicornis]
Species abbreviation PACUT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q90YK3	L-gulonolactone oxidase OS=Scyliorhinus torazame OX=75743 GN=GULO PE=2 SV=1
P10867	L-gulonolactone oxidase OS=Rattus norvegicus OX=10116 GN=Gulo PE=1 SV=3
Q8HXW0	L-gulonolactone oxidase OS=Sus scrofa OX=9823 GN=GULO PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005380 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04030 all species →	ALO	D-arabinono-1,4-lactone oxidase	Family	Interproscan
PF01565 all species →	FAD_binding_4	FAD binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016167 all species →	Homologous_superfamily	FAD-binding, type PCMH, subdomain 1	Interproscan
IPR030654 all species →	Family	Sugar 1,4-lactone oxidase	Interproscan
IPR036318 all species →	Homologous_superfamily	FAD-binding, type PCMH-like superfamily	Interproscan
IPR016171 all species →	Homologous_superfamily	Vanillyl-alcohol oxidase, C-terminal subdomain 2	Interproscan
IPR007173 all species →	Domain	D-arabinono-1,4-lactone oxidase, C-terminal domain	Interproscan
IPR006094 all species →	Domain	FAD linked oxidase, N-terminal	Interproscan
IPR016169 all species →	Homologous_superfamily	FAD-binding, type PCMH, subdomain 2	Interproscan
IPR016166 all species →	Domain	FAD-binding domain, PCMH-type	Interproscan
IPR006093 all species →	Binding_site	Oxygen oxidoreductase covalent FAD-binding site	Interproscan
IPR010031 all species →	Family	L-gulonolactone/D-arabinono-1,4-lactone oxidase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43762 all species →	L-GULONOLACTONE OXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0003885 all species →	Molecular Function	D-arabinono-1,4-lactone oxidase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0016899 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00103	GULO; L-gulonolactone oxidase	EC:1.1.3.8	Ascorbate and aldarate metabolism	ko00053	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.