Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g25725.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000008:1496857...1500281
NR annotation: RMX61270.1, hypothetical protein pdam_00007399 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___RNAseq.g25725.t1

ATGAGCGAGAGTGTCAAAGTTATTGTTCGTTGTCGACCACTGAATGAAAAAGAGCGAGAAATGAAAACACGACTTGTCGTAGAAACAAATGCTTCATTGCAGCAGTGTAGCATTAAAAGACCCTGGGACAATTCTAAGTGCTCCAAAATATTTACCTTCGATGGAGTGTATGGAATTTCAAGCTCTACTGAGATGATATACTCTGAAATTGTTCGTCCGATTGTAAATGGCGTTCTTGATGGATACAATGGTACAGTATTTGCTTACGGTCAAACCTCGTGCGGGAAAACTTTCACAATGGAAGGTATTGAAAGTCCCTCTGCTCAAAAGGGTATCATTCCTAGATGCTGTGAACATATTCTGAGCGTCACTCGGCAACGCAGCTTTGATGAACTTCCTAAATATCTACTGCGTGTTTCTTACCTTGAGATCTACAATGAAGAAATCAAAGATCTACTTGTCAAAGAGTGCAGATACAAGCCCGAGATCAAAGAACACCCTGACAAGGGGATTTATGTCAAAGGTTTGTCCAGTATCACTGTGGATAGCTATGAAGATATGCAGGAGATATTTGAGGCAGGAGGGAAACATCGATCAGTTGGTGCAACGGCGCTCAATTCTGATTCTTCTCGGTCGCATTCCATCTTCACTGTTGATTTAGAATCGTGTCTTCGTTCACATCCGAAAGAAACAGAAGTGTATAGAACCGGAAAGCTCAATCTTGTTGATCTCGCCGGAAGTGAGCGACAAAGCAAATCTGGCTGCACTGGTGAACGATTTAAAGAATCTACTAAGATAAACCTGTCTCTGTCTGTGCTTGGGAATGTCATATCAGCTTTAGTGGACGGGAAGTGTAAATACGTACCTTATCGAGACTCTAAGCTCACAAGGCTTCTACAGGATTCCTTGGGAGGAAACTCTAAAACGTTAATGGTGGCTTGTATAAGTCCGGGAGAGAACAACTACGAGGAAACACTGAGTACTCTTAGGTACGCAAAGCGTGCAAAGGACATCAGGAACAAACCCAAGATCAACGAGGATCCTAAAGACACAATTATTAAACGATATCATGAAGAAATTCAACAACTTAAAAAAATAATTGCCAAAGAAATTCCAGTTCCGAAACAGTTAGTTACTGAGCTTAAAGAAACAGCTGAAGAAACCATTAGTAAAACATCAACTTACTACCGGACCCTGGCACAGCAAAGTGAGAATCATTTGAGCCAGTCGAGCGTAAAAGATTATCAAATGAGACTTTTTGAAACGCAAAAGCTTCATATCAAAGCTTGCGAAGAAACAACCACACTAAAGAGAGAACTTGATGAACTTAGAGCGCAGCTTCTGATTCAGCGGAAGAGATATGAATACGAAGCGAGAAGGAGCATGCTTGAGGAACATAAAACTGCTTTGATGCTATTGCGCGAGCGACGAATTGCAGACGGATGCAGTGCTTCGGACAACAGGAACCTTGCAAGAGTAAAAAATCAAAGTGAGACGCATTACACTTCGTTCAGTTTATCGGAAATTACGTCATCTAGAGGATTATCACAGGAAATTACGACACGGGAATTGACGATTTCACCAGCACATACAGACCTGGAGTATTCAAATTTTAACTTTGAGAACCTGACGGATGTGACGTCGGAAACAGAGAGGGCGTCAGAACCGGAAGGTAAATCCTCACCGGAAGTACCTGCCATGATATCTGTGTCAACTTCAACGGACGATCTTCGCGATCTCGAAACAGATGTCGATTCAACAGACGAGGATCAACCGAAGAGGGAATGGGATACTCGAGAAAACAGTTTGTGTCGAGAAGAGGCCGAAGGACGATCAAGAAGTGTGTCGCCGTACACAGTAGAAAAGAAAAGGTATGCTGGTGTCGAGCCCTCCAGCAGCGAAGTCATTTACCCACTGGACGAGGAGGGTCCAGTCAGCGTAGGGTTATGTTGCTTATGCCCAGAGATTTCATTCTTTGGGGAGAGATTCCAATTATATCAGCACAGACGACTCGAAGAGGTTTTAAGAAAAAAGCAAAAACTGCCTTAA

Transcript

Pocillopora_acuta_HIv2___RNAseq.g25725.t1

Protein

Uniprot

Uniprot term	Description
Q9P2E2	Kinesin-like protein KIF17 OS=Homo sapiens OX=9606 GN=KIF17 PE=1 SV=3
Q99PW8	Kinesin-like protein KIF17 OS=Mus musculus OX=10090 GN=Kif17 PE=1 SV=1
P46873	Osmotic avoidance abnormal protein 3 OS=Caenorhabditis elegans OX=6239 GN=osm-3 PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00225	Kinesin	Kinesin motor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001752	Domain	Kinesin motor domain	Interproscan
IPR036961	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR027640	Family	Kinesin-like protein	Interproscan
IPR019821	Conserved_site	Kinesin motor domain, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47969	CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003777	Molecular Function	microtubule motor activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0007018	Biological Process	microtubule-based movement	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0005875	Cellular Component	microtubule associated complex	Interproscan
GO:0007052	Biological Process	mitotic spindle organization	Interproscan
GO:0051231	Biological Process	spindle elongation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20198	KIF17; kinesin family member 17	-	Cytoskeleton proteins	ko04812	deepkoala