Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g25876.t3 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000008:3440929...3452900
NR annotation: XP_027038025.1, myb-related protein B-like isoform X1 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___RNAseq.g25876.t3

ATGTTGCTTCTTCTTAAGGCAGCAGAGTCGGTTGCAAGAGGTTATAATGTTCCCGTAGAGGAAGAACCATCGTTGAGGGCTCAGCGGCGAAAGAAGAAAATCAACAAGGGAAGATGGACGAAAGAGGAGGATGAAAAATTAAAGGAACTTGTGGATGATCTTGGAACTGATAGTTGGAAGGAGGTGGCAAATAATTTCCCTGATCGCACAGATGTTCAGTGCCTTCACAGGTGGCAGAAGGTACTAAACCCAGAGCTAGTGAAAGGTCCATGGACTAAAGAGGAGGATGACAAAGTTGTGGAACTTGTGCGGAAGTATGGACCTAAACGGTGGTCGCTTATTGCTCAGCATCTGAAAGGAAGGATTGGAAAACAGTGTCGTGAAAGATGGCACAATCATCTTAACCCACAAATCAAGAAATGTGCTTGGACTGAAGATGAAGACAGGATTATTTATGAAGCTCACATTACTATGGGCAACAAATGGGCTGAGATAGCAAAATTGTTACCTGGGAGGACTGACAACTCAATTAAGAACCACTGGAACTCAACAATGAGAAGAAAAGTGGAAAGTGCAGGATATGATCACTATAGAAAGATCAGATACCATTTGTCTGAAAAACGGTACAGCAAAGGACATCTTCTTTCAGCAAAGAAAGATAAAAGGAGGAGAGAGGAGACAGTTGATCCTTCATCTGATGATGATTTACCATCAGTGGTTGAATACAACAGCCATCCAGGCACTAGAAACAGAAGTAGCTCAGACTTAACAAACATTAAACCAAAACCAACAAGTCAAGATACTCTTCATTCTATGAGCAGAAAGAACAACAATAATGGAACAAACCCAAGCCTGATGTCGCCCTTTAGAAATACGTTCATATTGTCCCCAGAGTCTTCAGATGCTCTGCTAGATTCGGATCCCTCCTCTTGGGGTGATATCAGCTCATTTGACAAGGACAGTTGTGTAGGCAAGAATTTGGCATTGTCAAAATTGACTTCTCCTGGAACAAGAGAATACAGATTTGATGGGAATTCTATTGCCAGTCTTCAAACAGATGGCGGATCTTTAATACCTATTACTTCACCTGTAATGCAGAACAGGTTTAGCACACCTCCAACTATTCTTAGACGAGGGCGTAAAAGAAAATCTGCTGACCATGATTTCAGTCACAGTGTCAATACAGAAGTATCTTTCAGCAGTCCTAAAGGGGCCACCCCCATCAAGCTCTTGCCATTCTCACCTTCGCAGTTCCTTAATTCACCTGTAAATTCAAGCAAAGTTCAGACGTCAACTCCAGCTTGTGAAAAAATTCAAGTCAGTTTAACAAACACAACACTGCATACTCCTGGTGTACTAGAAGCAAGCTCAGGGGAGGATCCTTTCCGAACTCCACGCATCAGAAGAACTTTATTATGTGTATCTCCACGCACTCCAACACCATTTAAAAATGCCCTGAAAGTGTTCAATGACACGAAAATGGCACATACACCAGACAATTTTGAAGCAGATTTCAATGAAATCATGAAACGGGAGGAAGAAGAAAGTGGTGTTCACTTATCCTGTAGTGGGGGAAAAACATCCTCTAGAGTACGGACCTCCCTTGAGGAAAAGTATGCCAAGATGAGCAAAACAACATCAGCATCTGCTGCCAATGGATCAGAAGAACAACCAAGTGTGATGGAACAAGAACAAAGTTCTTCAATTGTTGAGTGTGTTGTGGAGGATTCCGGTGTTGTTCAGACATCAGTTTTACCCTCACCTTCCAAGGATTCATCATTTATCAAACCTTCTGAGATCTTTGGCCAGCATAACCCCTTTGCCACACCTAGTTCTGTGACGTCTGAAACTGGAGTAAGTGGAAAAAACCTGGCTCAAACCACACAGGTTGAACATTTCTTATGCCCTAGTGCTGTGGATTTTCAGCGGCACAGAAGGAAAGGGCATCCCATGCGCATACTGCAATTTCAAGAGACGCCACAGAAATCAGCACCAAAGCTTGACTCAGCATGGGAGCAGGTAGCATGCGGTAAAACTCCTGATCAACAGCTACTAACTCAACAAGCTCATCAGTTTTTTGCTAATTACCGGCCAGCGGCACGTACACTACACTTCAATACAACTACAGTGGCTTAA

Transcript

Pocillopora_acuta_HIv2___RNAseq.g25876.t3

Protein

Uniprot

Uniprot term	Description
P10243	Myb-related protein A OS=Homo sapiens OX=9606 GN=MYBL1 PE=1 SV=2
P52550	Myb-related protein A OS=Gallus gallus OX=9031 GN=MYBL1 PE=2 SV=1
Q03237	Myb-related protein B OS=Gallus gallus OX=9031 GN=MYBL2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00249	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan
PF09316	Cmyb_C	C-myb, C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR001005	Domain	SANT/Myb domain	Interproscan
IPR017930	Domain	Myb domain	Interproscan
IPR015395	Domain	C-myb, C-terminal	Interproscan
IPR050560	Family	MYB Transcription Factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45614	MYB PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09420	MYB, C-MYB; transcriptional activator Myb	-	Transcription factors	ko03000	deepkoala