Detailed information of Pocillopora_acuta_HIv2___RNAseq.g25935.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000008:4271570...4362188
NR annotation: XP_027054866.1, MAM and LDL-receptor class A domain-containing protein 2-like [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
B3EWZ6MAM and LDL-receptor class A domain-containing protein 2 (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
B3EWZ5MAM and LDL-receptor class A domain-containing protein 1 (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
A2AJX4MAM and LDL-receptor class A domain-containing protein 1 OS=Mus musculus OX=10090 GN=Malrd1 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00088TrefoilTrefoil (P-type) domainDomainInterproscan
PF00040fn2Fibronectin type II domainDomainInterproscan
PF00057Ldl_recept_aLow-density lipoprotein receptor domain class ARepeatInterproscan
PF00629MAMMAM domain, meprin/A5/muDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002172RepeatLow-density lipoprotein (LDL) receptor class A repeatInterproscan
IPR036055Homologous_superfamilyLDL receptor-like superfamilyInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR000998DomainMAM domainInterproscan
IPR023415Conserved_siteLow-density lipoprotein (LDL) receptor class A, conserved siteInterproscan
IPR051560FamilyMAM domain-containing proteinInterproscan
IPR017957Conserved_siteP-type trefoil, conserved siteInterproscan
IPR000519DomainP-type trefoil domainInterproscan
IPR000562DomainFibronectin type II domainInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR044913Homologous_superfamilyP-type trefoil domain superfamilyInterproscan
IPR036943Homologous_superfamilyFibronectin type II domain superfamilyInterproscan
IPR035992Homologous_superfamilyRicin B-like lectinsInterproscan
IPR013806Homologous_superfamilyKringle-like foldInterproscan
IPR000772DomainRicin B, lectin domainInterproscan
IPR017994FamilyP-type trefoil, chordataInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23282APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan

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