Detailed information of Pocillopora_acuta_HIv2___RNAseq.g26737.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000022:2776784...2781848
NR annotation: XP_022783525.1, U6 snRNA-associated Sm-like protein LSm6 [Stylophora pistillata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P62312U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens OX=9606 GN=LSM6 PE=1 SV=1
P62313U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus OX=10090 GN=Lsm6 PE=1 SV=1
Q9M1Z3Sm-like protein LSM6A OS=Arabidopsis thaliana OX=3702 GN=LSM6A PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01423LSMLSM domain DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001163DomainSm domain, eukaryotic/archaea-typeInterproscan
IPR016487FamilySm-like protein Lsm6/SmFInterproscan
IPR010920Homologous_superfamilyLSM domain superfamilyInterproscan
IPR047575DomainSm domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-FInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0000932Cellular ComponentP-bodyInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005688Cellular ComponentU6 snRNPInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0005732Cellular Componentsno(s)RNA-containing ribonucleoprotein complexInterproscan
GO:0030490Biological Processmaturation of SSU-rRNAInterproscan
GO:0046540Cellular ComponentU4/U6 x U5 tri-snRNP complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12625LSM6; U6 snRNA-associated Sm-like protein LSm6-Spliceosomeko03041deepkoala

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