Detailed information of Pocillopora_acuta_HIv2___RNAseq.g26754.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000022:3019952...3034092
NR annotation: CAH3144384.1, unnamed protein product, partial [Pocillopora meandrina]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5ZQU0Sushi, nidogen and EGF-like domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Sned1 PE=2 SV=2
Q70E20Sushi, nidogen and EGF-like domain-containing protein 1 OS=Mus musculus OX=10090 GN=Sned1 PE=2 SV=2
Q8TER0Sushi, nidogen and EGF-like domain-containing protein 1 OS=Homo sapiens OX=9606 GN=SNED1 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00084SushiSushi repeat (SCR repeat)DomainInterproscan
PF00094VWDvon Willebrand factor type D domainDomainInterproscan
PF06119NIDONidogen-likeFamilyInterproscan
PF03782AMOPAMOP domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR005533DomainAMOP domainInterproscan
IPR003886DomainNIDO domainInterproscan
IPR051495FamilyEpithelial Barrier and Cell Signaling ProteinInterproscan
IPR001846Domainvon Willebrand factor, type D domainInterproscan
IPR014756Homologous_superfamilyImmunoglobulin E-setInterproscan
IPR000436DomainSushi/SCR/CCP domainInterproscan
IPR035976Homologous_superfamilySushi/SCR/CCP superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13802MUCIN 4-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0007160Biological Processcell-matrix adhesionInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K23820SUSD2; sushi domain-containing protein 2-Domain-containing proteins not elsewhere classifiedko04990deepkoala

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