Detailed information of Pocillopora_acuta_HIv2___RNAseq.g26772.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000022:3251455...3260682
NR annotation: XP_027042889.1, probable methyltransferase TARBP1 [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q13395tRNA (guanosine(18)-2'-O)-methyltransferase TARBP1 OS=Homo sapiens OX=9606 GN=TARBP1 PE=1 SV=1
E9Q368tRNA (guanosine(18)-2'-O)-methyltransferase TARBP1 OS=Mus musculus OX=10090 GN=Tarbp1 PE=1 SV=1
Q07527tRNA (guanosine(18)-2'-O)-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRM3 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00588SpoU_methylaseSpoU rRNA Methylase familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029026Homologous_superfamilytRNA (guanine-N1-)-methyltransferase, N-terminalInterproscan
IPR001537DomaintRNA/rRNA methyltransferase, SpoU typeInterproscan
IPR029028Homologous_superfamilyAlpha/beta knot methyltransferasesInterproscan
IPR044748DomainTrm3/ TARBP1, C-terminalInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR045330FamilyProbable methyltransferase Trm3/TARBP1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12029RNA METHYLTRANSFERASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0008173Molecular FunctionRNA methyltransferase activityInterproscan
GO:0016423Molecular FunctiontRNA (guanine) methyltransferase activityInterproscan
GO:0030488Biological ProcesstRNA methylationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K15333TRM3, TARBP1; tRNA guanosine-2'-O-methyltransferaseEC:2.1.1.34
Chromosome and associated proteinsko03036deepkoala

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