Detailed information of Pocillopora_acuta_HIv2___RNAseq.g27454.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000000:979938...1004682
NR annotation: XP_027050010.1, sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q4LDE5Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Homo sapiens OX=9606 GN=SVEP1 PE=1 SV=3
Q923L3CUB and sushi domain-containing protein 1 OS=Mus musculus OX=10090 GN=Csmd1 PE=1 SV=2
Q96PZ7CUB and sushi domain-containing protein 1 OS=Homo sapiens OX=9606 GN=CSMD1 PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00431CUBCUB domainDomainInterproscan
PF07699Ephrin_rec_likeTyrosine-protein kinase ephrin type A/B receptor-like DomainInterproscan
PF07645EGF_CACalcium-binding EGF domainDomainInterproscan
PF00092VWAvon Willebrand factor type A domainDomainInterproscan
PF12661hEGFHuman growth factor-like EGFDomainInterproscan
PF12662cEGFComplement Clr-like EGF-likeDomainInterproscan
PF00084SushiSushi repeat (SCR repeat)DomainInterproscan
PF00008EGFEGF-like domainDomainInterproscan
PF00354PentaxinPentaxin familyDomainInterproscan
PF02494HYRHYR domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000742DomainEGF-like domainInterproscan
IPR003410DomainHYR domainInterproscan
IPR000859DomainCUB domainInterproscan
IPR000436DomainSushi/SCR/CCP domainInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR001759FamilyPentraxin-relatedInterproscan
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR011641DomainTyrosine-protein kinase ephrin type A/B receptor-likeInterproscan
IPR049883DomainNOTCH1 EGF-like calcium-binding domainInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR002035Domainvon Willebrand factor, type AInterproscan
IPR035976Homologous_superfamilySushi/SCR/CCP superfamilyInterproscan
IPR035914Homologous_superfamilySpermadhesin, CUB domain superfamilyInterproscan
IPR009030Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR051277FamilySEZ6/CSMD/C4BPB Neuronal & Immune RegulatorsInterproscan
IPR000152PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR013032Conserved_siteEGF-like, conserved siteInterproscan
IPR026823DomainComplement Clr-like EGF domainInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45656PROTEIN CBR-CLEC-78Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan

TOP