Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g27967.t1b in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000000:6662088...6682252
NR annotation: XP_027053193.1, structural maintenance of chromosomes protein 1A-like isoform X1 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___RNAseq.g27967.t1b

AAGTCTAATTTAATGGATGCTATCAGTTTTGTATTTGGAGAACGCACACAAAGTCTCAGAGTTCGTACTGTTAAGGATCTCATTCATGGAGCTCCTATTGGCAAAGCTGTATCCAGTACAGCAATGGTTACTGCTGTTTATGCAGAGGAAGATGGAACTGAGATAAACTTTACAAGGAAGATTGTTGGTAGTGGCACTGAGTACAGAATTGATAACAAAGTTGTCACCCCACAGCAGTACACTTCAAAACTTGAAAGTTTGGGAATATTGGTAAAAGCCAAGAATTTTCTTGTGTTTCAGGGGACTGTTGAATCGATTGCCATGAAAACTCCGAAAGAGAGAACTCAGATGTTTGAAAAAATCAGCAGATCAGGTGAGCTTGCAGACGATTATGACAAAAAGAAAGTAGACATGCAGAAGGCTGAAGAGGAGACAAGTTTTAATTACCATAAAAAGAAGGGAATTGCAGCAGAGAAAAGAGAGGCCAAAGCTGAGAAGGAAGAAGCTGACAAATACCACAAGCTGAATCAAGAACTGGAAAGTTGTCAACTTGAAGTTAAGTTGTTCCAGTTGTATCACAATGAACAAAGTATAAATCACTTAACTAGTGAACTGAAAGCTAAATCTCGTGACTTGGACAAACTTGACCAAAGGAAAAATGAAATTGACCAGCAGCTCAAGAGTAAGAAACAAGACAGCGCTAAGTTATCAAGGGAGATGGCTTTTGTAGAGAAGAAAATAACTAGCAAGGAAGCAGAACTGAACAAGAACAGACCACAGTATATTAAAGCCAAGGAGAAAACTTCTCATGTTTTGAAGCGGCTTGAATCTTCTAAGAAAGCTTTTGACAAAGCCAAGAATGTTCATAAAAAGCATGAAGCTGAAATCAGGGAGCTTGAGCATGATTTGGATGAGGTTCGCAATGCAGCAGCAAAGTATGAGGAAGATGTGTCAGGAGCAAGTCAAGATGAAAATGTGGAACTGATGGATTCACAGGTTGAACAATATCATGCATTAAAGGAACAGGCTGGGAGGGAGACTGCAGCCCTTAAGTTACAGTTAGACAAGATTGTGAGAGAGCAGAACTCTGAACAGGAATTCCTAGACCAGTTAAAACAGAAAAAGGTGGATCTTCTTGCTCAGCAGAAACACAAGACAGATCAAAGGACTCAACTCACAGAGAGAATTGAAAAACTTGATGAATATATTAGCACGAACATACAAACAGTGGATAAGTTGAGGCAAGATCATGACAAAATGGAAAAGGACATCAATGATGCCAACTCTCGTCATAGCGAAATAAGTCAACTTCTTGAAGGTGTACAGGGAGAATTAAATGAAGCCAAAATGGACAAACATGAAAGTGCTAGACATCAAAAGAAGCAAGAACTTTTGGAGAGCATGAAGAGACTCTTCCCAGGGGTTTATGGACGACTTATAGATCTCTGTGAACCAGTCCACAAAAAGTATACACTTGCAATAACAAGGGTCCTTGGAAGAAACATGGATGCCATTGTTGTGGATACAGAAAAAACTGGAAAAGACTGCATTCAATATTTAAGAGAACAGCGAGCTGATCCTGAGATGTTCCTTCCTCTGGACAGCATTCAAGTAAAGCCTATCAATGAAAAGTTGAGGCAGATTGGTGGTACTGCTAAGCTAGTCATTGATGTAATTAGATACAACCCACCAGTTGTCAAGAAAGCATTGCAGTTTGCTTGTGCAAATGCCCTTGTCTGTGATGGAATGGAGGAAGCAAGAAAGCTTGCATTTGGTGGTGCAGAGAGAAAGAAGACAGTCTCCTTAGATGGAACACTTTTCCAAAAGTCTGGTGTAATTTCTGGTGGAGTAAGTGATCTAAAGGCAAAGGCTAGACGGTGGGATGAGAAGCAAGTTGAGGGAATGAAGAAAAAACGTGACAGCTATTTGGCAGAATTAAAAGATCTTAGCAAACACCGTAGGAAAGAGCCAGAACTGCAGAACCTGAGATCTCAGATTGATGGGCTTGAACACAGACTGAGATACTCTACTAAGGATAAAGAAACTACAGAAAAACAAACTCTTGGAGAAATTTCTAAGGAGCTGAAGATCATAAAGAAAGAACTAGACAGCCTGGAGCCGAAGAGAGAGAAGTTGCTTCTTTCAATGGCCAAGAGGAGTGAAGAAATCACTAATACTGAGAAAAGAATGAACAGAGTGGAGGACCAGGTTTTCAGGGGATTTTGTGAGCAAATAAATGTGGAGAACATAAGGCAATATGAAGAAAAACAACTTAAAGCACGGCTAGAGAGGGATCAACGCCGCCTAGAGTTTAACAACCAGGAGTCACGCCTCATAAATCAGTTGGAGTATGAGAAAGGAAGAGATACCAAAGGTCAACTAAAAAAACTGGAGGAAAGCATGGCAGCTGATGAATTAGAGATTGAAAAACTCAGAGGAGAGGAAAAGGAGAAACTGAAGTTAATTGAGAAAGACACAACAGAGCTGGAAAAGCTGCGTTTGGAAAAATCAGCAAAGAAGTCTCAGATAGATGAGAAGGATCTGGAAATAAAGGAAGTCAAGAAAAGCTTTATGCATCACATGAAGGATGTTACAACTCATCAAAAACAAATCACTGCCATGGAAACTCAGTTGGAGCAAAAGAGAGCAGATCGTCACAGTCTCTTAAAGTCATGCAAGATGGAAGACATCTTCCTTCCCTTCAAAAAGGGAGGAATGAATGATATTGATCTTGGAGAACCTTCAAGTAGTCAGCCAGAAATGTCAAGTCAGGACCGAGGAGAATCATCATCAATGGAAATTGACAGCACAAGCACACAGGGGGCCAAGATCACTTATGAGAGGGAGGCCAATCTAATTATTGACTACTCTTCACTTGGTCGAAGCTTAAAGCAGCTTGAAGACCCATCAGAAATCCGTAACACAATGAATGAGCTGGCAAACAAGGTGAACAAGCTGCAGGCAACTTTACAGAGGATACAGGCTCCAAATATGAAGGCACTTGAGAAATTGGATGGAGTAAGTAGTCGATTTCAAGAGACAAGTGCTGAGTTTGAGCAAGCACGAAACAAAGCAAGAAAGGCCAAGATTGAGTTTGAAACTGTCAAAAAAAATAGGTATGACCGGTTTATGGATGCATTTGAACATGTTTCACAAAGAATAGATGACATATACAAGGAGTTGGCCAATAATCCTAGTGCCCAAGCATTCCTTGGACCAGAGGATGCAGAGGAACCCTATCTTGGAGGAATCAATTACAACTGTGTAGCACCAGGGAAAAGGTTTCGACCAATGGATAATTTATCAGGTGGAGAGAAGACTGTTGCTGCACTTGCTCTTCTCTTCAGTATTCACAGCTACCAGCCTGCCCCATTCTTTGTTTTGGATGAAATAGATGCAGCCCTGGACAACACTAACATCAACAAGGTTGCAAGGTACATTATTAATGAAACCAGAGAGCATTTTCAGTGCATTGTGATTTCACTTAAAGAAGAGTTCTACACAAGAGCTGAAGCTCTTATTGGAATCACTGCGGAGCCTGATAAGGACTGTACAGTGAGTCGGGTGTTTACTTTGGACTTGACTCAGTATCCTGAGTAG

Transcript

Pocillopora_acuta_HIv2___RNAseq.g27967.t1b

Protein

Uniprot

Uniprot term	Description
O93308	Structural maintenance of chromosomes protein 1A OS=Xenopus laevis OX=8355 GN=smc1a PE=1 SV=1
Q9Z1M9	Structural maintenance of chromosomes protein 1A OS=Rattus norvegicus OX=10116 GN=Smc1a PE=1 SV=1
Q9CU62	Structural maintenance of chromosomes protein 1A OS=Mus musculus OX=10090 GN=Smc1a PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06470	SMC_hinge	SMC proteins Flexible Hinge Domain	Domain	Interproscan
PF02463	SMC_N	RecF/RecN/SMC N terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR010935	Domain	SMCs flexible hinge	Interproscan
IPR003395	Domain	RecF/RecN/SMC, N-terminal	Interproscan
IPR036277	Homologous_superfamily	SMCs flexible hinge superfamily	Interproscan
IPR024704	Family	Structural maintenance of chromosomes protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18937	STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005694	Cellular Component	chromosome	Interproscan
GO:0051276	Biological Process	chromosome organization	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0007062	Biological Process	sister chromatid cohesion	Interproscan
GO:0008278	Cellular Component	cohesin complex	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06636	SMC1; structural maintenance of chromosome 1	-	Chromosome and associated proteins	ko03036	deepkoala