Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g27972.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000000:6738122...6748484
NR annotation: RMX38328.1, hypothetical protein pdam_00005523 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q2KID6	Pleiotropic regulator 1 OS=Bos taurus OX=9913 GN=PLRG1 PE=2 SV=1
Q922V4	Pleiotropic regulator 1 OS=Mus musculus OX=10090 GN=Plrg1 PE=1 SV=1
Q9WUC8	Pleiotropic regulator 1 OS=Rattus norvegicus OX=10116 GN=Plrg1 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR045241	Family	WD repeat Prp46/PLRG1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19923	WD40 REPEAT PROTEINPRL1/PRL2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0000974	Cellular Component	Prp19 complex	Interproscan
GO:0071011	Cellular Component	precatalytic spliceosome	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12862	PLRG1, PRL1, PRP46; pleiotropic regulator 1	-	DNA repair and recombination proteins	ko03400	deepkoala