Detailed information of Pocillopora_acuta_HIv2___RNAseq.g28362.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000000:11728940...11737487
NR annotation: CAH3104042.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation PACUT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q92828Coronin-2A OS=Homo sapiens OX=9606 GN=CORO2A PE=1 SV=2
Q9BR76Coronin-1B OS=Homo sapiens OX=9606 GN=CORO1B PE=1 SV=1
Q9WUM3Coronin-1B OS=Mus musculus OX=10090 GN=Coro1b PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002136 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16300
all species →		WD40_4Type of WD40 repeatRepeatInterproscan
PF08953
all species →		DUF1899Domain of unknown function (DUF1899)RepeatInterproscan
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR015048
all species →		DomainDomain of unknown function DUF1899Interproscan
IPR019775
all species →		Conserved_siteWD40 repeat, conserved siteInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR015505
all species →		FamilyCoroninInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10856
all species →		CORONINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0007015
all species →		Biological Processactin filament organizationInterproscan
GO:0051015
all species →		Molecular Functionactin filament bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K13887CORO2; coronin-2-Cytoskeleton proteinsko04812deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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