Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g28751.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xpSc0000390:455174...464565
NR annotation: CAH3130972.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q9NZI7	Upstream-binding protein 1 OS=Homo sapiens OX=9606 GN=UBP1 PE=1 SV=1
Q7T2U9	Transcription factor CP2 OS=Gallus gallus OX=9031 GN=TFCP2 PE=2 SV=1
Q6NZH6	Transcription factor CP2 OS=Xenopus tropicalis OX=8364 GN=tfcp2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04516	CP2	CP2 transcription factor	Family	Interproscan
PF18016	SAM_3	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR007604	Domain	CP2 transcription factor	Interproscan
IPR040167	Family	Transcription factor CP2-like	Interproscan
IPR041418	Domain	SAM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11037	TRANSCRIPTION FACTOR CP2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0001228	Molecular Function	DNA-binding transcription activator activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09275	TFCP2; transcription factor CP2 and related proteins	-	Transcription factors	ko03000	deepkoala