Detailed information of Pocillopora_acuta_HIv2___RNAseq.g29114.t2 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000022:40289...45311
NR annotation: XP_022792701.1, collagen alpha-1(X) chain-like isoform X3 [Stylophora pistillata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00229TNFTNF(Tumour Necrosis Factor) family DomainInterproscan
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008983Homologous_superfamilyTumour necrosis factor-like domain superfamilyInterproscan
IPR006052DomainTumour necrosis factor domainInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11471TUMOR NECROSIS FACTOR FAMILY MEMBERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005164Molecular Functiontumor necrosis factor receptor bindingInterproscan
GO:0006955Biological Processimmune responseInterproscan
GO:0016020Cellular ComponentmembraneInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K24213C1QTNF9; complement C1q and tumor necrosis factor-related protein 9-Domain-containing proteins not elsewhere classifiedko04990deepkoala

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