Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g29281.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000022:1492895...1497925
NR annotation: XP_027055023.1, F-box/LRR-repeat protein 18-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___RNAseq.g29281.t1

ATGGAGTATCTTCCGGAAGAAGTGTTGCTTTTAATATTTCAAAACATTGAACCATTGGAGCTTATTTCTTTGTCAAGAGTGAACCGCTGCTGGCGTAAACTTGTAATAATCCCTCAACTTCACAGGTGCGTCAACTTTCATGGGAAGCAACATCTATCCTCCGGTTTTATCTGCAACTACATCAGCAAGTTTAAACACTCACTACAAGAGCTGAATCTACAAGAATGCTATTGGATTAAAGGAGCTCTTCTTTCCAGTACACTTCAAAAGTGCCGAAAATTAACATCTCTCAACTTACTTGGTTGTAGTGTGACCAAAAAAACACTTTGTTCTCTTTTAAAACTCAATGCTAACCTTAAAACGCTTGCATGGTCTATGAATGAAAAGGATTTACCCATAGGCTCTCATTTGGAGGGATATACCTTAGGGGTATTCCATGGATTATTGCTCTCTTTCTGCAGTGGACTTTCAGAAGCTTTTAAAGGTTTGGATAGTCTGACAATCCGGCTTCCAAACATTTATGTGACCGCCCTCATTGTGAATCAGGGAATTCCGATTATTTGCAGTGAACTTCATTTGAAGGCATTTACCTTGCAGTGGATTGATGTGTCAGGTAGTTACAGGTCCCATTGTCCTAAACTTTCCATTGAAGGAAGTGAAATCCAGTTTTGCAGGAGAGAGACAGAAATTGATTTTGCAGGTCTCAGTGTTATTGGAGAAGCAAGGAAGTCAATCAATCGTGGGTTGGAAAGTGGAACTTTCCATACATTTATTGTACCCTCCAGTTTTCAATTTCTTGACAGAAACCGTGACATTTGTGAAAAATTTATGAAAACTGTGGGAAACAGATCATCTATTGTCAACTTGAAGTTGGGTGCCTTGGCTTTAAACGAATATGATGTAGATTGTCTTATGACAGTTCTTAGTATGCAGTGGCAGGCACTGGTGTATTTGAATCTTTCTGGTTTTGTCATTTCTGGCCATTTTCTTCAAGTCATTGCAACTTCTTCACCAAACTTGGAGATTCTCAACTTACAAAATTGCTCAGATTGCTTCACACCAATTCAAGGACTGGAATCACTGGCTTCATTGTGTCCAAAAATGGCTGAGTTGAACCTCAATGGAGTACATTATGATCAAACATCCCAAGGAGAATCAAACAGTTGCATCAAAGTCATCTCAAAATTCACCCATCTGGTTTCTCTCAGCCTCTGCACATGTGTGACACATCAAGTCTCAAGTGATGACACAGAAGGTGCAAAGACTAGTTCTAAAGGAAGTATACTCAAGGCAAATAGAAGAGTATGTCATGGACAGAATCTTAAAAACTCTCAGTCAAGCACTGACCCAGCCACCAAATTGCAGAACCATTTTGTTTTTCTTACCCAAGAATGCACTGGAATGACAGACTTTGAACTTTGGTTTCCCTCACGTCATGACAGAGAGCTTAGCTACCGTCCAACCTTGTACCAACCAACATGTGATGCAAGAAGGGGTACACTTGATGGTCTCCTGCCAATTGCCAACTGGAAACACCTGCAAAGGCTTACTCTTTCAGTGCCATATACAAAAGGAAGTTTGAAATTCTTAGTTACCATCACACAGAACTGTGGCAATCTTCAATTTCTATCCCTTGCAAACCTTGAGAATCTCAGCCATTCAGGGAATGTAGCACTTCTTCAACAGGCACTTTCTTGTTGTCTTCAACTTCGAGATTTCAGATTTCAACAGAAAGCATTTAGGATCAATGAGTCATTCTTACTGTCACTTGGAGAATTAAAACATCTTCAACGAGTGTGCATTATTGCTAAAGGAGGCCCTTTGACAGTAGCTCCTAAAACAGTCATCTCATTGTTTGAAAAGTGCCAGAAACTGTATTATTTTCATTTATTCTGTGATATGACAAGAAAAGCCAGTAAAATCATTATGGATTCTGTAAAGAAAAGATTTTCAGATACACGCTCGGCGCTGATCGTGGGTTTAGTTCCTTTTTACCCGACAGACCTGCACTTCAAGCTGTTAAATGAGAGCACTTCTATTCCCTTTTTGCATATCAGTGAAATGTTACTCGCCGAATCGTCAGTTGCAAGCAGTTTTAATAAGAGACAAACATGA

Transcript

Pocillopora_acuta_HIv2___RNAseq.g29281.t1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937	F-box-like	F-box-like	Domain	Interproscan
PF19729	FBXL18_LRR	F-box/LRR-repeat protein 18, LRR	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001810	Domain	F-box domain	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR045627	Domain	F-box/LRR-repeat protein 18, LRR domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16134	F-BOX/TPR REPEAT PROTEIN POF3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10284	FBXL18; F-box and leucine-rich repeat protein 18	-	Ubiquitin system	ko04121	deepkoala