Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g29613.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000032:216971...220729
NR annotation: CAH3108109.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___RNAseq.g29613.t1

ATGGCGTCGGCAAATGAATTTATTGTCGCTCTGTCAATGGTTTGCTTCTGTCAAACTGTTCATGCTACGCCAAATGCAACAAACTTCGAGTCGTCGAGCCTACCATATGATCCTCGATTGAACCCGAGTGTTGGTAATGGATATTTGGCCACTGCAGTTTACAGCGACACGGTTTATGTCTCTGGGATCTTCAACGGGCGTGGGACAGAAACTCCGAGTCACAGGGCGAGAATTCCTTCCACGTCGGCGATCGTCGTACGAACCAATCTCTCCTCTAATGCCACTGAAGAGCTCTTCAGCCTTAATGTGGCACAAGGGGTGTTCTATCACAGGCTTCACGTGGATAACTTTACCTTAGAACAGCGAATGTATGCTCATCGGGTTCACCAGCATTTGCTTGTCACGGAGATAGCCTTTCAAAACAACATGCGCGACACAGTAAGTTTGTTTATGACTAATGTTTACGGACCGCCGAGCGTTGATATTGATTTCAAAAGAGATGATTTTCCACGTAAATCTCTGGATGACCTTAAGATCAATTCCATATCTGGGTACATTAAGATAACAGAGGAGCCGACCAGTCCGAAGGAGGGGGTCGCTGTTGTCTGGGGGGATATACCCCCTCGTTTAGACATCCGTCCTTCCTCGGAGATCCAAACCTTTTACTTTATCACGGCAATAGCGACTAGTTTAGACGCTAAGGATTTCTTGACGAACGCGCATCAAGCTTATAAAGATGCTATGGAACAACCGGAAAAGCTCCTTGAGAGTCACATTGAGGCTTGGAAAGAACTTTGGGACGCGGGCCGCATTGATTTGGAGGGCAATCTTACATTGGCTCAGACAGTTTCCGGGAGTCTTTATTACACACTCAGCTCCCTTCGCTCCTCGAGGATTTTCGGTCTGAGTCCCGGAGGCCTGGCGACTGATGGATATGATGGTCACGTGTTCTGGGATCAGGAGACGTGGATGTTTCCCCCGCTTCTCCTTCTACACCAAGATTTGGCGCGAACGTGTCTCGCTTACAGGTTTGAGCGGCTCCAAGCAGCTGAAGAAAAGGCTAAGAAATATGGATTCCGAGGAGCAATGTTTCCATGGGAAAGTGCTGTGACTGGTTCAGAAGTGTGCCCCGGGGAGATTTACTCCGATTACGAGCAGCATATCACAGGCGATATTGCATTCGCAGTCAGGCAGCTGTGGATGGCATCAGGAGACCAACAGTGGCTCCGGAGCCAGGCCTTTCCCCTTATTCGAGCCACTGCGGAATTCTGGGCGAGTCGCGCGATCTACAACGACTCCAAAAGAGGTTACGTCATTTACAACGTTATGCCACCGGACGAAGATGCTGAAGTCGTGAATAACTCGGCCTACACTAACATGATCGCGAAATTAAATCTAGAATTCGCCCACGAGGTCCTTCCGAATGCCTCCGAAAATTGGAAAACCATAGCACAGAACATGTACATACCGTTTGATTCCACAAACGACTATCATCCCGAGTACGATGGGTACCAAGGGATCGAGGTAAAACAAGCCGACGTTATCCTACTCGGATATCCACTAATGGTAAACATGAGCTCGCAGTTACGACGAAATGATCTGAGTTTCTACGAGCCCAGGACGAATCCGCGGGGGCCCGCCATGACTAAATCTATGTTCGCCATTAACTGGTTAGATATCGGTGAAAATTCTCGAGCAGAGAAGTCTTTCAATGCTAGTTACGTAAACGCAAAGATTCCCTTCATGGTTTGGACCGAGAGTGCGGACGGTGGGGGTGCTGTGAACTTCATCACAGGAGCCGGCGGATTTCTTCAATCCATTCTGTCTGGTTATGGCGGACTGCGTCTGCGCGATGGAAGACAACTTCAATTCAACCCCAAGCTTCCACCTGGGAGCACTGGATTAAAGTTTGTGGGTATCGATTACCATGGAAACAGCATAGACTTCGTGATTTCCGCATCGCATTCGCAGATTGTTGTTACGTCACGCCAACAATCAGCCCCATTTCTCCAGGTGACAGTTCTCAGCTCAAAGGAGAAGTACCGTTTAGAGATTGGGGAGAAAATTAAAGTGCCTAATGAACCACTTATAATAAGCCCTCTCCAAGCTAACAAAATAACTGAAATAAAACTTTTCGTGGAGACGGTATTAACTTAA

Transcript

Pocillopora_acuta_HIv2___RNAseq.g29613.t1

Protein

Uniprot

Uniprot term	Description
F1NZI4	Protein-glucosylgalactosylhydroxylysine glucosidase OS=Gallus gallus OX=9031 GN=PGGHG PE=1 SV=3
Q8BP56	Protein-glucosylgalactosylhydroxylysine glucosidase OS=Mus musculus OX=10090 GN=Pgghg PE=1 SV=1
Q32M88	Protein-glucosylgalactosylhydroxylysine glucosidase OS=Homo sapiens OX=9606 GN=PGGHG PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03633	Glyco_hydro_65C	Glycosyl hydrolase family 65, C-terminal domain	Domain	Interproscan
PF03632	Glyco_hydro_65m	Glycosyl hydrolase family 65 central catalytic domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005194	Domain	Glycoside hydrolase family 65, C-terminal	Interproscan
IPR012341	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR008928	Homologous_superfamily	Six-hairpin glycosidase superfamily	Interproscan
IPR005195	Domain	Glycoside hydrolase, family 65, central catalytic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11051	GLYCOSYL HYDROLASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K22078	PGGHG, ATHL1; protein-glucosylgalactosylhydroxylysine glucosidase	EC:3.2.1.107	Enzymes with EC numbers	-	deepkoala