Detailed information of Pocillopora_acuta_HIv2___RNAseq.g29900.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000011:1309979...1324320
NR annotation: XP_027045332.1, la-related protein 1B-like [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q6ZQ58La-related protein 1 OS=Mus musculus OX=10090 GN=Larp1 PE=1 SV=3
Q659C4La-related protein 1B OS=Homo sapiens OX=9606 GN=LARP1B PE=1 SV=2
Q6PKG0La-related protein 1 OS=Homo sapiens OX=9606 GN=LARP1 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05383LaLa domainDomainInterproscan
PF21071LARP1_HEATLARP1 HEAT repeat regionRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR045180FamilyLa domain containing proteinInterproscan
IPR006630DomainLa-type HTH domainInterproscan
IPR018247Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR006607RepeatLARP1-like, DM15 repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22792LUPUS LA PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0010494Cellular Componentcytoplasmic stress granuleInterproscan
GO:0045727Biological Processpositive regulation of translationInterproscan
GO:0000339Molecular FunctionRNA cap bindingInterproscan
GO:0048255Biological ProcessmRNA stabilizationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K18757LARP1; la-related protein 1-Messenger RNA biogenesisko03019deepkoala

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