Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g29997.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000011:2253977...2259364
NR annotation: XP_027046610.1, protein lin-37 homolog isoform X1 [Pocillopora damicornis]
Species abbreviation PACUT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96GY3	Protein lin-37 homolog OS=Homo sapiens OX=9606 GN=LIN37 PE=1 SV=1
Q1RMQ5	Protein lin-37 homolog OS=Bos taurus OX=9913 GN=LIN37 PE=2 SV=1
Q9D8N6	Protein lin-37 homolog OS=Mus musculus OX=10090 GN=Lin37 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005342 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15306 all species →	LIN37	LIN37	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028226 all species →	Family	Protein LIN37	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31336 all species →	LIN37 HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0017053 all species →	Cellular Component	transcription repressor complex	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0031523 all species →	Cellular Component	Myb complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21774	LIN37; protein lin-37	-	Cellular senescence	ko04218	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.