Detailed information of Pocillopora_acuta_HIv2___RNAseq.g30102.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000011:3457789...3472536
NR annotation: RMX55805.1, hypothetical protein pdam_00009567 [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P49793Nuclear pore complex protein Nup98-Nup96 OS=Rattus norvegicus OX=10116 GN=Nup98 PE=1 SV=2
Q6PFD9Nuclear pore complex protein Nup98-Nup96 OS=Mus musculus OX=10090 GN=Nup98 PE=1 SV=2
P52948Nuclear pore complex protein Nup98-Nup96 OS=Homo sapiens OX=9606 GN=NUP98 PE=1 SV=4
Gene familySubfamily
Ubiquitin FamilyUBD|ZnF|NZF

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21240Nup98_GLEBSNup98, Gle2-binding sequenceDomainInterproscan
PF13445zf-RING_UBOXRING-type zinc-fingerDomainInterproscan
PF00643zf-B_boxB-box zinc fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR052667FamilyE3 ubiquitin-protein ligase RING-typeInterproscan
IPR027370DomainZinc finger, RING-type, eukaryoticInterproscan
IPR001876DomainZinc finger, RanBP2-typeInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR000315DomainB-box-type zinc fingerInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47156PROTEIN CBG20824Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0008270Molecular Functionzinc ion bindingInterproscan

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