Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g30143.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000011:3843867...3847094
NR annotation: CAH3125985.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___RNAseq.g30143.t1

ATGGCGGGTAGTTTGAACATTTCCCGCGAGCAAAAAGAAGATACAATTGTACAAATTCTAGAAGATGCTTGCTCAATAGAGAAAATTGAAAACACCTATCGTTGCATTAGAATAAAGGATGTATCTCAAAATATGGATTTTTCCACATGCATGGTGAAAGGTGTGTTGATCTCAGTATACCCAATTTTCCATACATCAACAGGCTGGGTGATGAAACTTTCTATCAAAGATGATAATTCTGGCTCACCAGATGTCATCTCAGTCTTTCTGAGGGGGAAATTTGTAGAGAAGTGTAAGACGGTGAAGGAAAAAGACGTACTTATGATAAAAGGAGCCAAGGTTGAAAGTTCACCAAGGGAAGGTCATAGATTTGAAATCATTGGTGACGAAAAAAGCTGTAAATTTCTCAAAGTATGGGTTGTGCGAGATTCTAATAACATGTTAAACGCAGGTAGTAATGTTGTTCGGAGACCTCTGCCTCTTGCATCAGAATGTGCAGTGTTTGTCAGTGCAGAAAAGACAGGACGTGAACCACCAAGCAAAAGAAGCAGGCTTGTCCTACAACCTCAAATTGTGAAATACACGAAGCTGGCAGATATACGTGCTAACACCACTGTTAATGTATTTGGTGTGGTGAAGTTCTTTAAGAGCCCCTTCAAGACCAAGGGCTCTGATTTTGTCTGCTCATTAAGCTTAGTCGATCCCTCTCTGGCTTCCCTTGAAGAAAGTTTTAAGTTGGTGCTCTTTTCAAAGTCAAAGGAAAGGTTGCCATTGATTAGATCTGTAGGAGATATTGTGCGTTTTCATGGTGTTGCTGTTGGCAATTTCAAAGGAGAGATGCAAGGAAAGTTCTTACCTGAATCAACCTGGCTTGTATTTGACATAAATTGCACAGATAACCACCAAGCACGGGCATCATCGTCGAAATCGTACAATTTGACAGAACAAGAAAAAGATGCAATTGAGGAATTACGATTGTGGGCATTGCAGAAGGAATCTCTAAACAAGAAGTTTGTCATTACTAACCTGAAAGACTTGAGCACAAGTCAGACATTTGTAAACCTTCTCTGCCAAGTTGTGTCAAAAAGTTACACTGAAGCTAGCAACGGTATTGCTTTGACTCTATGGGATGGATCACCCCCTGCCTGTCAATCAACTTCAGTGGAACCACTCAGTGAACAGGGAGAATTAAAATCAGAGGAGCTCATTCACAAGTCAGCTGGCAAATGTGTAGAGGTGTTTCTATATGACAATCATGTAGAGGGGGAGGTCAGAAAAGTCAGTCCTGGCAATTTTGTCTGCATCAGAAATGTTCATATCAAAGAGCTGGAAGCCAGTGCTGATATGACAACAGATAAGCCTGAGATGGTGCTGTCTCACCCTTGTGTTAGTCTCATAGTACACGGAGGTACAATATGTGGGCGTGGTGTGGAGATTGTGTCAATGAGCGATCCCATGGTTTCAGTAAGCTCTACATTGAAGTTGGTTGCTGAAGCTGAAGCAGAAGCTTCAGTGACCCACCAGAATACAGAACAACAATCAGAAGCCATAGAGAATGGATTTGTTGATGTTCATGATGGACGCAGAACAACTGACCACAGTGGAATTCAACAAGAAATGGAGAACTTTAACAAACAGAAGGAAAGTAACTCTTTGATCACAAATGAAATAAACCGGGCACTTCAGACATCGTGTACAATAACAGAGCACCCTAGCATTGCTTTCAGTTCTTTGAAAGAGATCAAGACATACAAGACTGTTCCATACAAATTTCGCTGTAGAGTCAAGGCAATGATGTATTTACCATCAGATGTGAAGTCTTTCATACGGAGATCTTGTCAGTCTTGTAAATACTTACCTCAAGAAAGTTCCAGTTCTGTTTGTTCTGCTGCCAACAGTGATATCATCCCATGCTCTTTGTGTGGTCAGGAGATGACTCTTTCTTATTTGTTTTCATTTGTTCTTGAGGATGATTCTGGCCTTCTCCATGCATTGGTCTTTGATAAGGATGTAAAAACTTTCTTTGCTGGTCTTCCACCGCCAGAAGAATTTTTAGTCCAAGCATCTCTTCAAAACACCATCCAGGAACATATGCTGTTTATGACAAATAATCCAAATAACTCTATTGAATGTGTGTACCAAGATCCAAAGGGTGATAAAAGACCATGGTTAGAACTCTGCATATTTTCATATCTTCCTGATAAAGATTGCAGAAAGGTTCAGTATCGAGTGTTTGATTCTACATTTGTTCATGACAGTTGA

Transcript

Pocillopora_acuta_HIv2___RNAseq.g30143.t1

Protein

Uniprot

Uniprot term	Description
P62597	Protection of telomeres protein 1 OS=Gallus gallus OX=9031 GN=POT1 PE=1 SV=1
Q91WC1	Protection of telomeres protein 1 OS=Mus musculus OX=10090 GN=Pot1 PE=1 SV=1
Q9NUX5	Protection of telomeres protein 1 OS=Homo sapiens OX=9606 GN=POT1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02765	POT1	Telomeric single stranded DNA binding POT1/CDC13	Domain	Interproscan
PF16686	POT1PC	ssDNA-binding domain of telomere protection protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028389	Family	Protection of telomeres protein 1	Interproscan
IPR011564	Domain	Telomeric single stranded DNA binding POT1/Cdc13	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR032042	Domain	Protection of telomeres protein 1, ssDNA-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14513	PROTECTION OF TELOMERES 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000723	Biological Process	telomere maintenance	Interproscan
GO:0000783	Cellular Component	nuclear telomere cap complex	Interproscan
GO:0010521	Molecular Function	telomerase inhibitor activity	Interproscan
GO:0016233	Biological Process	telomere capping	Interproscan
GO:0032210	Biological Process	regulation of telomere maintenance via telomerase	Interproscan
GO:0043047	Molecular Function	single-stranded telomeric DNA binding	Interproscan
GO:0051974	Biological Process	obsolete negative regulation of telomerase activity	Interproscan
GO:0098505	Molecular Function	G-rich strand telomeric DNA binding	Interproscan
GO:0000781	Cellular Component	chromosome, telomeric region	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11109	POT1; protection of telomeres protein 1	-	DNA replication proteins	ko03032	deepkoala