Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g30581.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000003:3460941...3479174
NR annotation: XP_027035642.1, ubiquitin carboxyl-terminal hydrolase 48-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___RNAseq.g30581.t1

ATGGCGCGTCGAACAACAAATCGGAAACAACAGGGAACTGTTCTGAAGCAAGCATGGGAATGGGCTGATTACACTGAACCAGAAAATGTCATCAATGATAACGTTGAAAGCGCCTATAGAATAAATACTGCCGCCTGTTCTCCGGGAAATTGCAGGAGGAACTGCAAAGCAAATCCAAACTGTTTTAATTGCCTTGGAGAAAGATTTTGGCTCAGCGAAATTAAAGACAGTTACTGGTTAAATTGTGAAGACCCAGAAAATGAGAGACGCCCAAAGAATGCTTTTGTTGGGCTTAAGAACCTTGGAGCTACATGTTATGTGAATACATTTTTACAGGTTTGGTTTCATAATCCAGTGTTTCGTTCAGCTATGTACAAGTACATCTCTCCTACAAGCGGAAGACCAGAACAAGAGGTCAAAAGAGCTGTAAATGGCTTGTCAACATCAGAAGCTTTATCAAGCAGCCTAAATAACTCTGAGGTGACTAATCATAGCAGTCATAATGGTGAAACCTCAAATAAACCTGCCAAAGATTCTTCTAAATTGAGCCGTCACAGTAGTGAGAATGGGGGATCCCTGGATAAACCTCTAAATGTGCCAACAACTTCCAGTAAGGTGTCAGCTGTCGAGCAGGTTCCGTTGCTTCCCTCTACTACTATACTGAACTCAGATGAAGCACCAACGACTGTTTGTGGACACCTTCAGTTGCTGTTTGCTCAGTTGCAGTACAGTTTTCGAAGGTACATTGATCCAAGTCCTTTTGTAGACAGTTTAGGACTTGACACTGCACAACAGCAGGATGCTCAAGAATTTAGCAAACTATTTACCTCATTACTTGAAGAAACTTTCTCAAAGCAGGCTGAGCCTGAGGTGCAGAATATTGTTCAGTCTCAGTTTGGAGGGGAGTACTTCTATGTCACAGAATGTCTGAGGTGTGGGAATAAATCCAAGAGGCTTTCTCGTTTTTATGAACTGGACCTTAACATACAAGGCCACTCATCACTGAACCAGTGTATCAAGGAGTTTTTGAAGGAAGAAAAGTTGGATGGTGACAATCAGTATTATTGTACTCAGTGTAACAGCAAACAGAATGCGGCACGTTACATTGAACTGCACTCCCTCCCTCCTGTACTCAATCTGCAACTGTTAAGATTTGTGTTTGACAGGAAAACAGGATACAAAAAGAAACTGAACTCATTCATTCAGTTTCCAGATAATCTTGATATGACAGAACATGTCAAGAGTGGAGGCTCTGGATCTAACCATGAGTATGAGCTGAGTGCAGTTTTGATGCATTTTGGAGTCAGTGCGTATTCAGGACACTATGTAGCACACATTAGAGACAAGAAGTCTGGATCATGGTACAAGTTCAACGATGAAGACATTGTCAAGATGCAAGGAAAGTTGAAGCTTTCTCAGGATGAAGACTCAACAGACACCAGCCCTAAGCCTGCTAAAAGGCCAAAATGTGCTCAAGGATTTCATGTGTCAAAAAATGCATACACTCTGGTGTACACTTTGAAAGGGCATAAAGGTGTAGGAAGTGAAGATGATGATGTCGAAGTCCCACCTCACGTACTTGAGTTAGTTGCCATGGACAACAGTTTATTTGAACACTGGGTTACGCAGGTCAAGACATTTCGTCAAAAGTTGATTGCCAAAGGACAGGAAAGTCAAGCTGAAATAAGGAGACTTTATTTAGAAATTCCGGTATCTTCAGAAAGAGACTATGAATGGATTTCTACAAAATGGCTGAAGGACTGGATGAATGAAAAAACTGTGACTCCGCCAGTGGACAATTCCTCTTTATTGTGTTCTCATGGAAAGCTTGATCCCAATCAAGCGCTTAATGCCAAGAGGATCAACATCAAAGCGGCTGACGAAATATTCAGAAATTACGGTGGACTGCCTAGACTTCAAAGTGATTCTTTGTGTATCAAATGTGTGCAAGAACAGTGTAGGAGAATACGGTTCGAAACTCGGCTGTCTGAAGACTACAAGTTTGTGTCAGACACTTTGAAGTCTCAACAATCCAACAGTGCAAATTATTTTTGGGTTGGTCGGCGGTCGCTTCTTCGATGGAAAGTTTTGGCGAATTACCAAGAGGAGGCACGGCAGAGTTTGATGGACAGTTGTCGAGTTAAAGCCAATCACGAAACAGAAGACGACGACGAAGATAAAACCAAACAGCATGAGAATAATGATATGACCATGACAGAAGAGGGAGGGAAACCACAGACATTGGACGGAGATCTACAGGACCCTGGCGAACAGGAGGAGGAAGACGAAGGAAATTCTGAATTCAATGAAGATTTGCTTTGTGAACATGGCGGCCTCTCCTCTGACGAATCCTGTCGGCGCCTTGTGCCAGATGAAGTGTGGCAGAGGTTGAGATATTACTTTCCTTCCGCTTCTGAATTCCCAGCTGCTCATTCAGCATGTAGAGCTTGCCAGGCAGATGATGAAGAAGAACGTCAGAAGAATGAGCTTCACAAACTACTTGCATCAGAGCAGAGAACTGTTTTGAGTCAATTGTATCTCGATAGGAACCGGCCGTCATTTGATAACGGCGATCCGTTCGTTGCTTGTGCAGTATCAAAAGATTTTATCGATCGATGGAGGCAGTTCTTAAGGTACCCCATAAGGAATGTTCCTCCGGAAAGAATTACAAATGCACTTTTGCTTTGCGCCCATGAAAAGTTCCATTTTAATCCTGGCTGCGAAGATGACGTGGATGGTGCGAGCGAAATGTTGCACTATGTTTGGCAACAAGAGTGGAACGTGCTTACCCGAAGCTATCCATACGATCACGTGATCACCGTCACGAAAACGGTAACAGAAGACGATGTGAGGGAGCTGGTGACTACCCCTGAAATATGCACAGATTGTTGCTTTGCGCGCATACAGGAGAGAGCTCAGCACGTAGAAAACTATCGCTATGGTACAATCTTCGTGCGGAAAATCACCAAAGATCACAGCGAGAAGGACATTGAGCAAGTAGTGAACAGTACTCCTTCCAGCAAAGACGGTTACTGTTTCGACCCAGACTTCCAGTCTCCACCGGACAGCAAGAAACAAAAACTTAACCGCGACCCGAAGGCGCGAAGAAGCTCCAGGCATCGTAAACAACGGGGAGAAGTGTCACTGACTGTTGGATCATCCGAGACCTTACGAGATGTCAAAGTACAGTTGATGAAGAGTTTCTCGGTGATGCCGATGGACCAACACCTCACCTTAAATGGCATCCCTCTCACTGACAATACAGCTACGCTTCGTTCATTAGGAATTAGACCAGGTTCCTTATTACTGCTTAAGATTGATGAACCTCAAGGTGCCATATCACAAGAGGCTCTCCCAGTGAACAATGCCCCTGAGGAAGGTTTCAAAGGAACTGGTCTGCTTGGTAACTCTTAA

Transcript

Pocillopora_acuta_HIv2___RNAseq.g30581.t1

Protein

Uniprot

Gene family

Uniprot term	Description
Q86UV5	Ubiquitin carboxyl-terminal hydrolase 48 OS=Homo sapiens OX=9606 GN=USP48 PE=1 SV=1
Q76LT8	Ubiquitin carboxyl-terminal hydrolase 48 OS=Rattus norvegicus OX=10116 GN=Usp48 PE=1 SV=1
Q5ZM45	Ubiquitin carboxyl-terminal hydrolase 48 OS=Gallus gallus OX=9031 GN=USP48 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_Other
Ubiquitin Family	DUB\|USP\|USP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028889	Domain	Ubiquitin specific protease domain	Interproscan
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR033841	Domain	Ubiquitin-specific peptidase 48	Interproscan
IPR035927	Homologous_superfamily	DUSP-like superfamily	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR044743	Domain	Ubiquitin-specific-processing protease 48, Ubl domain	Interproscan
IPR050164	Family	Ubiquitin carboxyl-terminal hydrolases	Interproscan
IPR018200	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24006	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0004197	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11858	USP48; ubiquitin carboxyl-terminal hydrolase 48	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala