Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g30727.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000003:5338604...5345708
NR annotation: CAH3135841.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q05048	Cleavage stimulation factor subunit 1 OS=Homo sapiens OX=9606 GN=CSTF1 PE=1 SV=1
Q99LC2	Cleavage stimulation factor subunit 1 OS=Mus musculus OX=10090 GN=Cstf1 PE=1 SV=1
Q5R8K2	Cleavage stimulation factor subunit 1 OS=Pongo abelii OX=9601 GN=CSTF1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16699	CSTF1_dimer	Cleavage stimulation factor subunit 1, dimerisation domain	Domain	Interproscan
PF02376	CUT	CUT domain	Domain	Interproscan
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051649	Family	CUT Homeobox Domain-Containing Protein	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR003350	Domain	CUT domain	Interproscan
IPR032028	Domain	Cleavage stimulation factor subunit 1, dimerisation domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR010982	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR038184	Homologous_superfamily	CSTF1, dimerization domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14057	TRANSCRIPTION FACTOR ONECUT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan