Detailed information of Pocillopora_acuta_HIv2___RNAseq.g30887.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000003:6984748...6996033
NR annotation: XP_027053351.1, DNA ligase 3-like isoform X1 [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P49916DNA ligase 3 OS=Homo sapiens OX=9606 GN=LIG3 PE=1 SV=2
P97386DNA ligase 3 OS=Mus musculus OX=10090 GN=Lig3 PE=1 SV=2
O57250DNA ligase OS=Vaccinia virus (strain Ankara) OX=126794 GN=OPG180 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00645zf-PARPPoly(ADP-ribose) polymerase and DNA-Ligase Zn-finger regionDomainInterproscan
PF10283zf-CCHHPBZ domainDomainInterproscan
PF16759LIG3_BRCTDNA ligase 3 BRCT domainFamilyInterproscan
PF04675DNA_ligase_A_NDNA ligase N terminusFamilyInterproscan
PF04679DNA_ligase_A_CATP dependent DNA ligase C terminal region FamilyInterproscan
PF01068DNA_ligase_A_MATP dependent DNA ligase domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001510DomainZinc finger, PARP-typeInterproscan
IPR036957Homologous_superfamilyZinc finger, PARP-type superfamilyInterproscan
IPR001357DomainBRCT domainInterproscan
IPR000977FamilyDNA ligase, ATP-dependentInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR019406DomainAprataxin and PNK-like factor, PBZ domainInterproscan
IPR012310DomainDNA ligase, ATP-dependent, centralInterproscan
IPR016059Conserved_siteDNA ligase, ATP-dependent, conserved siteInterproscan
IPR036599Homologous_superfamilyDNA ligase, ATP-dependent, N-terminal domain superfamilyInterproscan
IPR031916DomainDNA ligase 3, BRCT domainInterproscan
IPR012308DomainDNA ligase, ATP-dependent, N-terminalInterproscan
IPR036420Homologous_superfamilyBRCT domain superfamilyInterproscan
IPR012309DomainDNA ligase, ATP-dependent, C-terminalInterproscan
IPR050191FamilyATP-dependent DNA ligaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45674DNA LIGASE 1/3 FAMILY MEMBERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0003910Molecular FunctionDNA ligase (ATP) activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0071897Biological ProcessDNA biosynthetic processInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0006310Biological ProcessDNA recombinationInterproscan
GO:0003909Molecular FunctionDNA ligase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006266Biological ProcessDNA ligationInterproscan
GO:0006273Biological Processlagging strand elongationInterproscan
GO:0006288Biological Processbase-excision repair, DNA ligationInterproscan
GO:0006302Biological Processdouble-strand break repairInterproscan
GO:0070421Cellular ComponentDNA ligase III-XRCC1 complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10776LIG3; DNA ligase 3EC:6.5.1.1
DNA repair and recombination proteinsko03400deepkoala

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