Detailed information of Pocillopora_acuta_HIv2___RNAseq.g31328.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000036:484460...492283
NR annotation: XP_027037292.1, TNF receptor-associated factor 6-like isoform X1 [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
B5DF45TNF receptor-associated factor 6 OS=Rattus norvegicus OX=10116 GN=Traf6 PE=2 SV=1
Q6IWL4TNF receptor-associated factor 6 OS=Danio rerio OX=7955 GN=traf6 PE=1 SV=2
Q61382TNF receptor-associated factor 4 OS=Mus musculus OX=10090 GN=Traf4 PE=1 SV=2
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|U-box

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21355TRAF-mep_MATHTRAF/meprin, MATH domainDomainInterproscan
PF13639zf-RING_2Ring finger domainDomainInterproscan
PF02176zf-TRAFTRAF-type zinc fingerFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002083DomainMATH/TRAF domainInterproscan
IPR001293DomainZinc finger, TRAF-typeInterproscan
IPR049342DomainTRAF1-6/MEP1A/B-like, MATH domainInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR008974Homologous_superfamilyTRAF-likeInterproscan
IPR012227FamilyTNF receptor-associated factor TRAF, metazoaInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10131TNF RECEPTOR ASSOCIATED FACTORInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0033209Biological Processtumor necrosis factor-mediated signaling pathwayInterproscan
GO:0070534Biological Processprotein K63-linked ubiquitinationInterproscan
GO:0007165Biological Processsignal transductionInterproscan
GO:0042981Biological Processregulation of apoptotic processInterproscan

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