Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g3450.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000006:3746703...3760682
NR annotation: XP_027046945.1, WD repeat-containing protein 75-like [Pocillopora damicornis]
Species abbreviation PACUT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Pocillopora_acuta_HIv2___RNAseq.g3450.t1

ATGGTGCCCGAGGAAGACGAAATATCTGAACGGTTTGGATCGGTTCGCCTTGTTGGGGGTGAATCTCTGGTATCTCACCGAACAGTGTTCAGCAGAGACTCCAAGATCTTATTTTGCTCTTGCGGCCGAAAAATACGTGTGTACAGCACGTTAACGGGAGATTTATTGCGAGAACTCCAAGGACACGAAGGAAAAGTTACAGACTTTAAAATCAACCCTAAAAATCACTTACAGTTAATTTCCTGCGCAGTCAGTGGAGATGTCATATATTGGGATTATACAGATGGACAAATTATTAAGAAATACAGATTTGAGGGTTCTTTAGTAGGATTGATGGTTCACTCAGCACATAATGAATCGGTGTTCTTGATAAAGCAAACCTCATGTAAAGGTAAGAAGAGAAAATCAAAGGAAGAAAAGAAAAAAAAGCTTGTTGAACCAGAAGAGTACAGCTTGTCTGTGTACAATCCAAGATATTGTAAAAAAGTTGACAAACCAAAGTTAAAAGTGATACTTCATACATCGGGCAACTCCAAACAGACTACAATGAGTGGTGATGGCAACTTATTAGCAACTGTGAAGGAAAACAATCTACACTTGTGGAACTTCCTCTCTGGAAAATTAAATACGTTTTCATACAGACGCGTACAGTTTTCATGTGCAGCCTTTCATCCTTTAGAAGCTTGTGTTGCTACCGGTGTATGTGGTAGTGGGGAGATTATTTTATGGCAAGGTTTGGATCAGTTAGAAAGTCCTGCTACTTCAGTTCTTCACTGGCATCCTAATCCTGTCTCTGATATTATTTTTTCTCACGATGGTTCAAATATGTTTTCTGGTGGAGAGGAAGGTGTATTGGTGTTGTGGCAGTATAAGACAGATCACCAAGTCTTCCTTCCAAGGTTAAGCACTCCTATAAACCATCTTGCTATCAGTCCAGATGATTCATTGACAGCTGTCAGTCAAAGAGAAAATGTTATTAGATTAGTTAACAATACTGAATGGAAGATTAAACGGACAATTCAGGGATTGAGGCAAATTGATAATCTTTTTGCTGGTATTGTGTATGATCCACGCTCAAAAGGCCTAGTGACAAGTAACAAGCCTGGTGTTCTACAGTTTTACCTTCCACAAAGTGATCATCATGCATTTTCTCTTGATGTTGTAAGACAGAACATTATTGTCAGAACAAAGAAGGAGCAGGTAGTCTGCACCAAGGTTGATCAAATGGCATTCAATGACAGTGGAAGCTGGTTGGCAACAGTTGAAAGAAGAGATGACAAGAAAAATGCAATGGAATTGAGACTCAAATTCTGGGAATACAACCAAAGTGATCAGTGTTATGTTACAAACACCTGTGTCGATTCACCTCATGATAAGAAGATTGTAGCCATTCAGTTTCAGCCTCAGCAGAAAAGAGATGAAAGTACACCTCCTCTTGCCATGACTGCTGGAAAGGATGGAAAATTCAAGATCTGGCTTTTGGCTGAAGAAACAGCTATCAAAGGGAAGGAATACTCTTGGTCTTGTCAATCAGTTGGTTACTATGGTGACAAGCCTTGCCAAGATGCAGCTTTCTCACAGGATGGATCTCTCCTAGCAGTGGCTAATGATAAGGTTATCACTCTATGGACCCCAAGTACAAATGAGCTGAGAAAGACTCTAGCTTTACCCTACCCTGATGAGGAGATCAAGCGGATCAAGTTTGGACATAACAGCTCCTCACAGTACTTGGTCTCCATCACCAATCGGTATCTAACTGTGTGGAATCTTCTCTCCTGTACAGTTTGGTGGAGTGTGGAAGCCCCTGTGACGTGTTTACTGCCTGATCCACAAACAAATCTGATTTGTGTTTTCGTTTCATTCAACAAGAACAAATCGCACTTGTACATTTTCGACCCAGCCTCCCCTCATCCTGTGGCTGTTCAGTCCTCTGTGTCCAGGAGGTCGGATGTGGTGTCAGCGGTCTTCGACAGGGAAAGCGTTTTATGCAGCAACAAAAATGGGAAATCGTTCAAAATGTCGAAACTTTACTTCTTGAATCAGGAGCAGAAACTGTTCACATTGGATTTTGGTGAATCAGAAGATAAAAAGAGTCCAGTCAAGTCACAGGAATCTGCTGCGGGTCCAGAACAACAGACTGAATTCTATAAGATCTTCGGACAGTCAACGAAGAGTAGAGCGGAGTCCACTTCAGATCACCGCGTCGGTAAAAGTGTCAGGGGAAATCCATCAAGCGCTGTGGTCAGACAGATGCTGCAGACCCCTTCTCATGTTCTTCCTTCAGTTTCCTCTATTTGCTCATCATTTCTGCAGTCACTGTTGGTCAGCAAGCAATCCGCGCCAAGGGAAGATCAAGATAATGACAAGAATAGTGATGATGACAACGAAGTTGAAAGTATGGATGAGGATGAAGACAGCGACGTAGAAACAACGCGTGTTGCCGAAGGAGCTTCCGGGCAAGTTCCTGACTCTTCGATGGAAACGACAGACGGTGCTGTTTTGCAAAGCAGGCAACTCAATTCCGGAGAACATTACGCTGATCTTGACAGTGTTAATTTTACCTGGCTAAAAGACTTCTTCGCCTCCTCTTAA

Transcript

Pocillopora_acuta_HIv2___RNAseq.g3450.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DFC6	WD repeat-containing protein 75 OS=Xenopus laevis OX=8355 GN=wdr75 PE=2 SV=1
Q8IWA0	WD repeat-containing protein 75 OS=Homo sapiens OX=9606 GN=WDR75 PE=1 SV=1
Q3U821	WD repeat-containing protein 75 OS=Mus musculus OX=10090 GN=Wdr75 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005286 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44215 all species →	WD REPEAT-CONTAINING PROTEIN 75	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0045943 all species →	Biological Process	positive regulation of transcription by RNA polymerase I	Interproscan
GO:2000234 all species →	Biological Process	positive regulation of rRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14552	NAN1, UTP17, WDR75; NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.