Detailed information of Pocillopora_acuta_HIv2___RNAseq.g3547.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000006:4901671...4915762
NR annotation: XP_027036902.1, semaphorin-5B-like isoform X3 [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9YHX4Semaphorin-4E OS=Danio rerio OX=7955 GN=sema4e PE=2 SV=1
D3YXG0Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1
Q9NPR2Semaphorin-4B OS=Homo sapiens OX=9606 GN=SEMA4B PE=1 SV=4

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00090TSP_1Thrombospondin type 1 domainDomainInterproscan
PF01403SemaSema domainRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000884RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR036383Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR036352Homologous_superfamilySema domain superfamilyInterproscan
IPR001627DomainSema domainInterproscan
IPR027231FamilySemaphorinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11036SEMAPHORINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0001755Biological Processneural crest cell migrationInterproscan
GO:0030215Molecular Functionsemaphorin receptor bindingInterproscan
GO:0030335Biological Processpositive regulation of cell migrationInterproscan
GO:0045499Molecular Functionchemorepellent activityInterproscan
GO:0048843Biological Processnegative regulation of axon extension involved in axon guidanceInterproscan

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