Detailed information of Pocillopora_acuta_HIv2___RNAseq.g3807.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000024:1977336...1996564
NR annotation: XP_027035817.1, FRAS1-related extracellular matrix protein 2-like [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5SZK8FRAS1-related extracellular matrix protein 2 OS=Homo sapiens OX=9606 GN=FREM2 PE=1 SV=3
Q9GV77Extracellular matrix protein 3 OS=Lytechinus variegatus OX=7654 GN=ECM3 PE=1 SV=1
Q6NVD0FRAS1-related extracellular matrix protein 2 OS=Mus musculus OX=10090 GN=Frem2 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03160Calx-betaCalx-beta domainDomainInterproscan
PF16184Cadherin_3Cadherin-likeDomainInterproscan
PF19309Frem_NFrem protein N-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR051561FamilyFRAS1-related extracellular matrixInterproscan
IPR039005RepeatCSPG repeatInterproscan
IPR038081Homologous_superfamilyCalX-like domain superfamilyInterproscan
IPR003644DomainNa-Ca exchanger/integrin-beta4Interproscan
IPR045658DomainFRAS1-related extracellular matrix protein, N-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45739MATRIX PROTEIN, PUTATIVE-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0009653Biological Processanatomical structure morphogenesisInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan
GO:0007154Biological Processcell communicationInterproscan
GO:0016020Cellular ComponentmembraneInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K23380FREM1_2; FRAS1-related extracelluar matrix protein 1/2-ECM-receptor interactionko04512deepkoala

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