Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g3870.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000024:2700468...2706323
NR annotation: XP_027060342.1, U3 small nucleolar RNA-associated protein 18 homolog [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q5SSI6	U3 small nucleolar RNA-associated protein 18 homolog OS=Mus musculus OX=10090 GN=Utp18 PE=1 SV=1
Q9Y5J1	U3 small nucleolar RNA-associated protein 18 homolog OS=Homo sapiens OX=9606 GN=UTP18 PE=1 SV=3
Q9FMU5	U3 small nucleolar RNA-associated protein 18 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g14050 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045161	Family	U3 small nucleolar RNA-associated protein 18	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18359	WD-REPEAT PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006364	Biological Process	rRNA processing	Interproscan
GO:0032040	Cellular Component	small-subunit processome	Interproscan
GO:0034388	Cellular Component	Pwp2p-containing subcomplex of 90S preribosome	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14553	UTP18; U3 small nucleolar RNA-associated protein 18	-	Ribosome biogenesis	ko03009	deepkoala