Detailed information of Pocillopora_acuta_HIv2___RNAseq.g4219.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000030:1023084...1049339
NR annotation: XP_027045406.1, nipped-B-like protein [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q6KC79Nipped-B-like protein OS=Homo sapiens OX=9606 GN=NIPBL PE=1 SV=2
Q6KCD5Nipped-B-like protein OS=Mus musculus OX=10090 GN=Nipbl PE=1 SV=1
F1QBY1Nipped-B-like protein B OS=Danio rerio OX=7955 GN=nipblb PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12765Cohesin_HEATHEAT repeat associated with sister chromatid cohesionRepeatInterproscan
PF12830Nipped-B_CSister chromatid cohesion C-terminusRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR026003RepeatHEAT repeat associated with sister chromatid cohesion proteinInterproscan
IPR024986DomainSister chromatid cohesion C-terminal domainInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR033031FamilyScc2/Nipped-B familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21704NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003682Molecular Functionchromatin bindingInterproscan
GO:0010468Biological Processregulation of gene expressionInterproscan
GO:0034087Biological Processestablishment of mitotic sister chromatid cohesionInterproscan
GO:0061780Biological Processobsolete mitotic cohesin loadingInterproscan
GO:0071169Biological Processestablishment of protein localization to chromatinInterproscan
GO:0090694Cellular ComponentScc2-Scc4 cohesin loading complexInterproscan
GO:1990414Biological Processreplication-born double-strand break repair via sister chromatid exchangeInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K06672SCC2, NIPBL; cohesin loading factor subunit SCC2-Chromosome and associated proteinsko03036deepkoala

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