Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g4401.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000015:1323034...1324509
NR annotation: XP_027053795.1, E-selectin-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
C0HL13	Low-density lipoprotein receptor-related protein 2 OS=Sus scrofa OX=9823 GN=LRP2 PE=1 SV=1
P98158	Low-density lipoprotein receptor-related protein 2 OS=Rattus norvegicus OX=10116 GN=Lrp2 PE=1 SV=1
P98164	Low-density lipoprotein receptor-related protein 2 OS=Homo sapiens OX=9606 GN=LRP2 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00084	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035976	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR000436	Domain	Sushi/SCR/CCP domain	Interproscan
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR050350	Family	Complement & Cell Adhesion Regulators	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19325	COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K25357	ANGPTL5; angiopoietin-related protein 5	-	Signaling proteins	-	deepkoala