Detailed information of Pocillopora_acuta_HIv2___RNAseq.g6319.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000005:2295594...2300238
NR annotation: RMX47655.1, hypothetical protein pdam_00013608 [Pocillopora damicornis]
Species abbreviation PACUT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6MDM4Large ribosomal subunit protein uL1 OS=Protochlamydia amoebophila (strain UWE25) OX=264201 GN=rplA PE=3 SV=1
A8F4F7Large ribosomal subunit protein uL1 OS=Pseudothermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / NBRC 107922 / TMO) OX=416591 GN=rplA PE=3 SV=1
A9GRA4Large ribosomal subunit protein uL1 OS=Sorangium cellulosum (strain So ce56) OX=448385 GN=rplA PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005079 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00687
all species →		Ribosomal_L1Ribosomal protein L1p/L10e familyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR023674
all species →		Homologous_superfamilyRibosomal protein uL1-likeInterproscan
IPR016095
all species →		Homologous_superfamilyLarge ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainInterproscan
IPR028364
all species →		FamilyRibosomal protein uL1/ribosomal biogenesis proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR36427
all species →		54S RIBOSOMAL PROTEIN L1, MITOCHONDRIALInterproscan

 Gene Ontology
No Gene Ontology signature was detected for Pocillopora_acuta_HIv2___RNAseq.g6319.t1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K02863RP-L1, MRPL1, rplA; large subunit ribosomal protein L1-Ribosomeko03011deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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