Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g6407.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000005:5235468...5237113
NR annotation: RMX61569.1, hypothetical protein pdam_00020437, partial [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q61361	Brevican core protein OS=Mus musculus OX=10090 GN=Bcan PE=1 SV=2
Q28062	Brevican core protein OS=Bos taurus OX=9913 GN=BCAN PE=1 SV=1
P55068	Brevican core protein OS=Rattus norvegicus OX=10116 GN=Bcan PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001304	Domain	C-type lectin-like	Interproscan
IPR051004	Family	Dendritic cell-specific ICAM-grabbing non-integrin domain-containing protein	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22802	C-TYPE LECTIN SUPERFAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0009897	Cellular Component	external side of plasma membrane	Interproscan
GO:0030246	Molecular Function	carbohydrate binding	Interproscan
GO:0044419	Biological Process	biological process involved in interspecies interaction between organisms	Interproscan