Detailed information of Pocillopora_acuta_HIv2___RNAseq.g6557.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000017:1632965...1635870
NR annotation: XP_022784256.1, small nuclear ribonucleoprotein F [Stylophora pistillata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q3T0Z8Small nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=SNRPF PE=3 SV=2
P62306Small nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=SNRPF PE=1 SV=1
P62307Small nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Snrpf PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01423LSMLSM domain DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001163DomainSm domain, eukaryotic/archaea-typeInterproscan
IPR016487FamilySm-like protein Lsm6/SmFInterproscan
IPR047575DomainSm domainInterproscan
IPR010920Homologous_superfamilyLSM domain superfamilyInterproscan
IPR034100FamilySmall nuclear ribonucleoprotein FInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-FInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005685Cellular ComponentU1 snRNPInterproscan
GO:0034715Cellular ComponentpICln-Sm protein complexInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0000387Biological Processspliceosomal snRNP assemblyInterproscan
GO:0005681Cellular Componentspliceosomal complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11098SNRPF, SMF; small nuclear ribonucleoprotein F-DNA replication proteinsko03032deepkoala

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