Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g6743.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000017:3792885...3807349
NR annotation: XP_027051202.1, tubulin monoglycylase TTLL3-like [Pocillopora damicornis]
Species abbreviation PACUT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Pocillopora_acuta_HIv2___RNAseq.g6743.t1

ATGGATATGTTAGACTACTGCAAGACTTATAATATGGTAAAGAGCAGTTATGCTAACCAAGAATCTACCGATTTATCCTCTCAGGAAGCTCGACAACTCGGCAGTTCGCAGAAGAATCACGATAGTAATGATGGCAATATCTTAGGGGAGGCTGTTGAGAGTATTTCAACAAAACCTGGGGATTTATCCCGTTATGGGCCAGCTACACAGATCGTCAAGGACGTAAGCAATTCTGGGGAGAAGAAACTTAGCCCTTTGAAAGAGGTAGCACGGAAAAAAGGAATGATCTCGACGCTAAATACCAAGACTCAACAAAGACTGAACTTTGAATGTGAACTGACTTTTGCCCCGAAACTGAATGCACTGAGTATAAAACTGGCGAAAGAACGCGGCGAAAAGGTCCGATCTAGCTCGGACAAAAAGACGTATTACGCGGCAGATGAGTTTACTTTTAAACCTAAAGTTAGTTCAAACAGTGTGAAAATCGTACAGCAGTTAAAAACAACGTTTATGGACCGACAGCAAATGCATGTGGAGAAACAGAAACGCTATATTGAAGCAACAATCAACAATTTGAATCAAACCAAAGACAAGTTCACTCCAGTTCCTGATAAAGTTTCCAGCAGGTCTCCAACAAGTTTGAAAAAGATTTCAAAATTTAAAGAAGCAAGGACTGTAGAGGAAGATGATCAGAAGTTGTCTGATGAGAGTTTAATAACATCTCCAGAAGTTCTGGCATCAACTTCAGCGCCTGATTTTCTAACAACTCCCACCAAAAGCAAACATGATGGAACTAACTTGACAGGTTTGCAGGACCAATCTGCCAAAGAATCTGACTTGAAATCTATGTCTTCACATGATCTCACAAAGAAAACAAAATCATCTAGAAAAATTTCAGAAAATGCTGTAAATAGAGCTAATGCTGCATATCAAAAATTCCAAGAATCAAGTCCCTACAATCAGTCCCTTGAAAATTTGTACCTGAAAAAGGGCAAGCAAGTATTGAAAGCAGCACACAAAAGGACACTGACTCATCCCTTGGCAAAACCAGTTACAGTTGAAAGTGACAACAAAAGCCCTGGTTGGGATGAAAGTACAAAAGTTGAGATTACTGGAAAACAAAAAACTACTCACTCCAGGAGTCGGTCTCAACCAAATTCACAGCCAGGGAAAAAAAGTTATGATGATCCTTTGTTTGACAAAGTTAGAAATGCCAAAAAAGTCGCAGAAAATGCTATGAAGAAAAAGAAAGTATTTATATGTCATGGACCATACCCAATAGTGCGAGCTGTGCTTCGAAAGCGAGGATATGTAGAGAAACATTACAAAGGAAATCTTTTACCATCAAAGAATAAGAAAAATGACAGTGATGGCAGTGATGATGATGATTCATGTGACAGTGGGGATGATTCTGACAATGAAACATCACCCGGGAAAAACACAAAGATCTCTGGTAACCTTCCAGCTAAATCACATAGGGCATCAAAGACTAAAACAAGAACAGTAGTTAATGTCAGTAAGAATAACAATGATAATGATGATGATGATGATGGTAGTGGCTGTGATGATAGCGACAATGACAGTACTGATAATGAAGATTGGAATGCAGGGTACGAGGGTAATGGCCCGGACTGTGAGTTTAGTCTTATGTCCAGAACTGTACGAAATGCTGTGGCTTCATTTATATGGACAACCAGACGGGATGACGTGGATTTCAAGTTTTTAAAAAAGGATCAAATTGTGAATCATTACAGCAAAGCTGGCTCATTCACTACAAAGTTTGGTCTCACCACAAACCTGAGGAATTTGAAGTGGTATGAAGAGGCAGATCACTATACATTCTTCCCTCGTTCACACTTGCTTGGTTCAGATGATGAAAAAATGGATTTCATTGACGATTATCGTTTGACTGCTGCTTTGAGCATAGTTAAGTGGGTAGTTCAAAGGTATGAAAATGGCAACACTGATGATAAGCTCACGTCCAATAAAGAACCTCTGCCTCCTGATCAGGGGCATGCTACCCCTAAGACAACCTCTAGTGCAAAACCAAGAGATTCAGCCACATCCAGAGCAACATCCAGAGCAACATCCAGAGCGACATCCAGAGCAACATCCAGAGCAACATCCAGAGCAGGAACTGGTGTTACATCCAGAGCATCTTCCAGTGCAACATCTAATGTGGTACCTGTGAAGGCCCTGACACTTGCACTACAGGCTTGCCGAGATTTCCTCAAGTGTAAGGAGCATTTGGACATAGATGAGCCTCTTAGTAAGGGTCCAGCCATCTCAGAAGATTCGTGGAAACTACTAGTTGACTATTATTATCAAGTCAAGAGTCCTGGGACTGTTATTGCAACAGCATATCCTTTTCTCAAAGAGTGTCAGAATGTTGTGAAGCAGATGAAGGAATACCTTCCTCAAATTGACATTGATGGTACGAAGAACATTTGGATTGTCAAACCTGGAGCAAAATCAAGAGGCAGAGGAATTATGTGTATGGATCGTCTCGACGAAATTGTCAAGCTTGTTGGAAGTAATGCTGTAGGCAAGAAAGAAGGTCACTTGGTTGTCCAGAAATATATAGAAAGGCCACTGCTGATTTATGGAGTGAAGTTTGACATCAGACAGTGGTTTCTTGTTACTGACTGGAATCCTTTGACTTTGTGGTTCTACAAAGATTGCTACATACGATTCTGCAGTCAGAACTTTTCTCTGGAAGACTTTCACATAAGCATACACCTTGCCAACAATTCCATCCAAAAGCACTTTGAGAATGGAGTTCGCGACAAGCGTATTCCAGATGAGAATATGTGGGGTAGTGATGACTTGAAGGCTTATCTCAAGAAGCGTGGTGTTGGTGAAATGTGGGAAGAATCAATTTATCCTGGAATGAAGAAAGCTGTTATTTCTGCTGTGCAGTCCTGTCAGGAGATAGTGGAATATCGAAAGAATTCATTTGAGTTATATGGCGCTGACTTCATTATTGGTGAAGACTACAAGCCATGGTTGCTGGAAATAAACTGCAGTCCTACCATGGGACCGAGTACAGCAGTTACAAGAAAGCTGTGTGCACAGGTTCTGGAAGATACCATGAGAGTCGTACTTGACCGACGTGAGGACAAGAACTGTGACACAGGGAGATATGAATTGGCATTTAAGCAGCCCCAAGTGTCAGCTCCTCCGTACATTGGCATGAACATGGCAGTAGAAGGACAGGGAATACGTAAGCCAACAGCAAATGTAAAGAAGCATAATGAGCTGACATCTCCCAGAGTTGTACCAATCTCCAAAACCAAGGATCTCTCTACAGAAACTAAGGCTGCAATTGTCTCCCAGCACAAACAGACGTCTCCAGAAGGCAATAATACTAAGATTTCAACTTTATCTCGCCCCAAAGAGGCACGAAAAGTCATTGCAAATCTTTCAGGTGAGGCTTTGGAGACATTGAACACCAAAAGTCAGGGTGAAACAAAAAGGAAACCTGAAGGTTCATGGGCAACTGGTTGCATGTGTGCTGCACAGGCCATTCCCATAGCAACAACCTTTTGCACAACAGATGAAGGGAAGTTTAAAGGACTCATTAAAAGAAGTAAATCTCGTTATTCAGCTGATGTTGACATTGCAACCGAGATGCAACCAAAAGTTCCAAGGGCAATGCAAATACCAAAGGCAGTTCTCAAGTACTCCAATGACAACAGTATGCGACAGAGAACACAGCTACCAATATCTATTGGCCCAGACAGTAATGGAAAACATTTCTAA

Transcript

Pocillopora_acuta_HIv2___RNAseq.g6743.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B2GUB3	Tubulin tyrosine ligase 3 OS=Xenopus tropicalis OX=8364 GN=ttll3 PE=1 SV=1
A4Q9E5	Tubulin monoglycylase TTLL3 OS=Mus musculus OX=10090 GN=Ttll3 PE=1 SV=1
Q1ECV4	Tubulin monoglycylase TTLL3 OS=Danio rerio OX=7955 GN=ttll3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004986 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03133 all species →	TTL	Tubulin-tyrosine ligase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004344 all species →	Family	Tubulin-tyrosine ligase/Tubulin polyglutamylase	Interproscan
IPR051437 all species →	Family	Tubulin tyrosine ligase-like monoglycylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45870 all species →	TUBULIN MONOGLYCYLASE TTLL3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0036211 all species →	Biological Process	protein modification process	Interproscan
GO:0015630 all species →	Cellular Component	microtubule cytoskeleton	Interproscan
GO:0018094 all species →	Biological Process	protein polyglycylation	Interproscan
GO:0070736 all species →	Molecular Function	protein-glycine ligase activity, initiating	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16608	TTLL3_8; tubulin monoglycylase TTLL3/8	EC:6.3.2.-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.