Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g7414.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000001:1825257...1845167
NR annotation: CAH3040070.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___RNAseq.g7414.t1

ATGGCGACTTCTATTGAGATTCCGCTGAGAGATACGGAAGACGAGGTTATAGAGCTACAGTTTGACCAACTACCTGAGGGCGACGAGGTGCTAAGTATTTTGCGGCAGGAAAATGCACAACTCCACATTTGGATCACGCTTGCGCTTCAGTACTACAAGCAAGGAAAAACTGATGACTTTGTCAAACTTCTGGAAGCATCAAGAACAGATGCCAATCGAAACTACCGGGACAGTGAGAAGGGACAGATGGTCTGCTTGGATACACTTGCAGCATTCTATGTTCAACAAGCAAGAAAAGAAAGAAACAAAGAAACTAAAAAGGAATTGTTTACTAAGGCCACATCATTGTATTCTACAGCAGACAAAATCATCATGTATGACCAGAGTCACTTACTTGGGAGAGCATACTTTTGTCTCCTCGAAGGAGATAAAATGGAACAAGCTGATGCACAGTTTAACTTTGTGTTGGCACAGTCAGGAAACAATATTCCAGCTTTACTTGGAAAAGCTTGTATCTCTTTTAACAAAAGAGATTACAAGGGCTCATTAGCCTATTACAAGAAAGCTTTGAGAACAAATCCAAACTGTCCAGCTTCTGTCCGGCTTGGAATGGGTCACTGCTTTGTGAAACTTGGAAAACTGGATAAAGCTAGACTGGCATTTGAACGAGCCCTTACCTTAGACCCACTGTGCACAGGTGCTATGACTGGTCTTGCTATTCTTGAACTCAACTCAAAAAGGATGGACTCCATCAAGAATGGTGTGCAGTTGCTGTCAAGAGGTTATGCTTTGGATAACTCTAACCCCATGGTCCTAAATCACTTGGCCAACCATTTCTTCTTCAAAAAGGAGTACAATAAGGTACAGCACTTAGCTTTACACGCTTTTCATGGAACAGAGGTTGAAGCTATGCAGGCAGAGAGTTGCTATCAAAGGGCAAGAGTCTTCCATGTTCAGAATGACTATGATCAGGCATTCCAGTTCTACTATCAAGCAACACAATTTGCTTCACCAAACTTCATTCTTCCTCACTTTGGTCTTGGACAAATGTACATTGCCAGAGGAGACATGAACAATGCTGCACAATGTTTTGAGAAAGTTCTCAAAGCCACACCAGGAAATTACGAGACTCTGAAAATCTTGGGCTCTCTGTACAGCACATCAACAGATCTAGAGAAAAGAGAGACAGCCAAGAATCATCTCAAGAAAGTAACTGAGCAATATCCAGATGATGTGGAAGCATGGATTGAGTTGGCTGGAATATTAGAGCAGACAGATGTGCAGGCTGCCTTGCAAGCGTATGGTACAGCATCCCGGCTTCTCAAAGAAAAAGTGAAAGCTGATGTACCTCCAGAGATTTTGAATAATGTTGGAGCACTGCATTTTAGACTGGGAAATTTGAATGAAGCAAAGAGGTTCTATGAGTCATCCCTCGATCGGTGCAAGCAAGAGAGCCAAGCGGATGAGAGCTACTACAATGCAATCTCTGTCACAACGACGTATAACTTATCCCGCCTCCACGAGTCCCTGTGCGAGTTTGACAAAGCAGAGGCTCTGTACAAGAACATCCTCAGAGAACATCCTAACTATGTAGACTGTTATCTCCGGTTAGGTTGCATGGCACGTGACAGGGGTCAAATCTACGAAGCTTCCGATTGGTTCAAAGAGGCTCTCCAAATTAATCAGGACCACCCAGACGCCTGGTCCCTCATTGGTAACCTTCACCTGGCCAAGCAAGAATGGGGCCCTGGTCAGAAGAAGTTCGAGCGTATTCTTAAACAGCCATCCACAGCAAATGATGCATACTCGTTACTGGCACTCGGAAATGTCTGGCTTCAAACTCTGCACACACCAACACGTGACAAGGCCAAGGAGAAGCGACATCAGGACAGGGCTCTGGCTCTTTACAAGCAAGTGTTGAGAAATGATGCCAGGAATCTGTATGCAGCTAACGGTATCGGCTGTATTCTGGCACACAAGAGCTTTCTGAGGGAAGCTCGGGATGTATTTTCGCAGGTCCGTGAAGCAACTGCTGACATTCCTGATGTGTGGCTGAACCTGGCGCATATTTATGTTGAGCAAAAGCAGTATGTAGCTGCCATTCAGATGTACGAGAATTGTTTGCGGAAGTTTTTCAAGCATCATAACGTTGAAGTGTTGTTGTACCTGGCTCGTGCATATTTCAAAGCTGGAAAACTGAAAGAATGTAAACAAATATTACTCAAGGCTCGTCACGTGGCTCCTAATGACACTATTCTGTTGTTCAACATTTCCCTGGTACAACAGCGTCTAGCAACAGCCATTTTGAAAGCCGAAAAGAGTTCCCTTAAAGTTGTGCTTGGTGCAGTCAGAGAACTGGAGCAGGCGCAGAGAAATTTTACGTGGTTAAGCCATCATGGAGATCGCCTTAAGTTTGACTTAAGTTGGGCTGGGACCGAGTCTAGGCACACCAGTGATTTACTGAGCCAGGCGCAATACCATGTGGCGCGCGCCCGAAAAGTTGACGAGGAAGAACAGGAAACACGGCGGAGACAGGAAGAAGAGAAAGAAATGCTCAGAAAGAAGAAGGAAGAAGAGGAGAAAATTAGAAGGGAGCAACGGGAGCAACAGGAAAAAGAACTCCTGGAGAAACGTCAGCAATTCCGAGAAGCGACCAAAAACTTGCTGGTATTCGTACCTGAGGAACAAGCGCCAAAGGAGAAGGCCTCACGTGGAAGAAAGAAAAAGACGGCTGACGATTTCGTGGCCAGCAACGACGAAGAAAGTGAAGATGAAGATGGTGGTGATGTGGACGAGGAAGGAAATGAGGTGAAGAAATCAAAACTCAAGAAAGAGAAAAAAAGGCGAAGAAAACGAGTTCAAGAAGAAGGAGACGAGAATGCGCCCAAGAAAAAGAGAGCTCGTAAGCCCAAAGGCAAATCGAAGGAAACGAAATCTAGCGACGAAAGGTTGGGATCGAAACAAAGACAGAAAATCAAGTCCAAGGCATTCGTGTCATCATCTGAGGATTCGTCCGATTCTGATGCGGAAAAATTGAAAATTGCTGATGTGAGAAGTGATGAAGACCTAAGCGACAAATCTGATGCAGAGAAAAGCGATAAAAGTGATAAGGAAGACAATGTGGACGAGGAAGAGAAAGGGGAAAGTAGCGAAGCAGACAAACCTTCTTCTGGGAAGAAACGAATACTGTCAAGTGACGAGGATGAAGACGACCTTGATGATTTTATTGAAGACATTGAAGATAAAGCTGAAGGCGAAGAAAGACCATCCACAAGTCAAGAGACACCCAAGAAGAAAAGCAGGAAACTTCTCAGCTCGTCTGAATCCGATGATGATTAG

Transcript

Pocillopora_acuta_HIv2___RNAseq.g7414.t1

Protein

Uniprot

Uniprot term	Description
Q6DEU9	RNA polymerase-associated protein CTR9 homolog OS=Xenopus tropicalis OX=8364 GN=ctr9 PE=2 SV=1
Q4QR29	RNA polymerase-associated protein CTR9 homolog OS=Xenopus laevis OX=8355 GN=ctr9 PE=2 SV=1
Q6PD62	RNA polymerase-associated protein CTR9 homolog OS=Homo sapiens OX=9606 GN=CTR9 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13374	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan
PF14559	TPR_19	Tetratricopeptide repeat	Repeat	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031101	Family	RNA polymerase-associated protein Ctr9	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14027	RNA POLYMERASE-ASSOCIATED PROTEIN CTR9	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000993	Molecular Function	RNA polymerase II complex binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006368	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0016593	Cellular Component	Cdc73/Paf1 complex	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15176	CTR9; RNA polymerase-associated protein CTR9	-	Transcription machinery	ko03021	deepkoala