Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g799.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000002:4763771...4770231
NR annotation: CAH3159753.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___RNAseq.g799.t1

ATGAACAGTTCTTATCAGAAGGTGTCACAAGACCCTGATGAAAGCGATGATCGTCACAGATCATACCAGCCATATCATGATGATGAGGAAGGCTACGAAGGAAATTATGGCTATAACTATGGATACAACCCTTATCGCCCTCCAGCTGGTGGGCTCAAAGGAAAGGTGGAACAGAAATATTGGCACACCAAACAAACCGTGATACAAAAACTGGGAAAGGAGCAGGATTGTTATGTTGTGGCTGGGGATGCTGAGGTTGATGCACGGCTGGAGGCATTTCGGCATATTCAGAAGACATGCATAGACATACTGAAGGCAGTAGAAGTCTATCAAAATAGGATATTTGCTTTGTCTCAAGATGAAAATGAAATGGGACGGTTTCTGCGAGAGCAGGGTTCCCAGGATAAATCAAAAGCAGGAAAAATGATGATTGCTGTTGGCAAGGCTCAGAGTTACTCTGCACAGCAACGGCTTAGTCTTAGAACTCCGCTCGTGAGGCTTTACCAAGAAGTGGAGACATTCCGTTTCCGTGCAATCTCAGACACTTTCCAGACTGTAAATCGAATGGAACTGGCCAGAACAGACTACAGAGCTGGGCTCTTGTGGATGGCAAACATTTCTAAAGAGTTAGATCCTGAAGAATACAAAAGATTAGACAAGTTTAGAGAGGTTCAAGGCCAAGTCAGGAAGGGTAAAAAGAAATTTGAAAAGCTGAAAGTAGATGTTATGCAAAAAATAGACTTGCTGTCTGCAAGTAGATGTAACTTACTTTCAAGCACACTTGCTGCATACCAGCAAGCGTTGCTTAAGTTTTGGGAAAACACTTCTCGCACTATGATACAAGTATCAGAACAGTTTAAGGGGTTACCGGCATATCAGTTTCAAATGCTGAAAAGCCTTAATCCTCTGACTCTGGAAGGTGATGACAAGGAGAAGGGAGAAGAAGGAAAGGAAACCAAACCCGTCAGAGAATCTGAAGATGACAAAAAAGAATCCGCTGACTGTGGGGAAAAGAAAGAAGCTTCAAAAGAAGATGATGATGATCAATTAATTTCTCTGGATCATTCACCACTAGAAGAGAAAAAGACAGCTGAGGATGAGAACAAAAAGGCTGATAATGATGATGACGAAGCACTCTTAGAAACAGATTTATTGGGAGATGATGAAGTGTCCAATGGTAATGTGGATGAAAAATATGAAACGCCTTTCATTGATTTGCTTGGTGATGATGCTTTGATGCCATCAAACCACAAATCAGGGACCAGTGATCTTCTGTCATCATTTGAGGATCATCCAAGTAGTAATGGACTTACAAGTCATCGCTCGATTATGCCACCCAGCTATGAAGAGGCAAAGCAAATTCCTGTGCCTGGAAGTGAAAATGCATCATCAATGACGGCTGATGATCTGCTGTTTGGTTCCCCTACCAAGGAAGACAGAGCACCTGGAAACAAGTCAGATATTGATATCTTAAGTGAAATTCTTGGCTCCAATGGTTCCTCCATGCAAGGTGTCGAGAGTGAGAATAGCTTCAGTAAAACGTGGAAGGATATGTTCGGGGATGAGCCAGTTGAGACTGCCCAGCCGTCTTTGCAGGAACCCAATCAATCATGGTCCCAAGGGGGTTCCAACTTTATGATGCCCTCTGACCTCCTTAACAGCATGGCTAGGTTTGATCCATTTGGTGAGGTACCAACAGGCGCCCCTCCTCAGCATGCAGCAAGTGCAGCTTCAAAGATGTCAGCTCCCATGCAGGGAGGCAAGCGTCAAGAGGGTCATCAAGGTTCACAGGCCAAACAGGCTTCATTACTTGCAGGAAAAGCAAATGACAAAGGGAAAGGAAAGGGGAAAAAAGGTTCTGACATGTCTGCTTGGTTCAGTTTGTTCTCCGACTTGGATCCCCTAGCCAATCCTGATGCAATTGATAAACAAAACAAAAAGAGTGAAGAAGACAGACAATGTTAA

Transcript

Pocillopora_acuta_HIv2___RNAseq.g799.t1

Protein

Uniprot

Uniprot term	Description
Q63054	Islet cell autoantigen 1 OS=Rattus norvegicus OX=10116 GN=Ica1 PE=2 SV=2
Q05084	Islet cell autoantigen 1 OS=Homo sapiens OX=9606 GN=ICA1 PE=1 SV=2
P97411	Islet cell autoantigen 1 OS=Mus musculus OX=10090 GN=Ica1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06456	Arfaptin	Arfaptin-like domain	Domain	Interproscan
PF04629	ICA69	Islet cell autoantigen ICA69, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010504	Domain	Arfaptin homology (AH) domain	Interproscan
IPR024114	Family	Islet cell autoantigen 1/Ica1-like	Interproscan
IPR006723	Domain	Islet cell autoantigen Ica1, C-terminal	Interproscan
IPR027267	Homologous_superfamily	AH/BAR domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10164	ISLET CELL AUTOANTIGEN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0019904	Molecular Function	protein domain specific binding	Interproscan
GO:0005794	Cellular Component	Golgi apparatus	Interproscan
GO:0051049	Biological Process	regulation of transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19863	ICA1; islet cell auto antigen 1	-	Type I diabetes mellitus	ko04940	deepkoala