Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g8106.t2 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000001:10747389...10758499
NR annotation: XP_027051977.1, epithelial splicing regulatory protein 1-like isoform X1 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___RNAseq.g8106.t2

ATGGGCTCTCCCGAGCATTTGGTGTGTTTTCACTGCACTGTCACAAGATTGCCGTCAGGGGAATCGGACGCCGAGGAGGAAACCATCTCAGAGATTTCGTGGGTTGTCGTCGACGTGAAATCCAATCAGCCTGGTTCCGTGCATAGATGTGTTGTGAAATCGGGCCTGTCTGGAGCGAACGAAGCGTTAAAACAACCCACCAACAAATCGCTTGTGACCAGTGAAGCTCAACAGCTCGGGGACGCGTTAGAAAAGTTTGACAACTTTGTTGAGAAGACAGTGACATGTTCTGGGGAAAGATGGAATCTTGTGACAGATGGACAATTTCCATTAAGACATTACCTCCATTTGGAAGCTAGTAGAAAGAAAACCAAATTGTCTCAACATTTCTACAGCTTTTATGATCTTAGGAAGGAAGTCAGAAAGGCACTGAAGCATGATTCAGACTATAAAAGCCTTGAGGAAGTGGCCTCACATTGTAGAATCGATGCTAATAACAACAGTCCAGCGGGTCTGGAACACTGTAAACTCATGGCAAGTGTGGTTCAGTATCTTGTTACAGAAGGTCACAAATTTAAGGATCCAGAAAAGATCAGTTCCAAGTATGAGCCAGGAGCATGGTATGGTGCTTCTTTACGAACAAAAAATCTTGGGCCTGTACTTGATGATACAATCATAAGAGCAAGGGGGCTTCCCTGGCAAGCATCTGATCAGGATGTTGCAAATTTCTTTAAAGGACTTAATATTGTAAGAGGTGGGATAGCATTTTGTTTAAATGCACAAGGAAGAAGAAATGGTGAAGCATTCATCAGGTTTGAGAAAGGGGAACACAGAGAATTTGCATTGAAAAGACACAAACATCACCTTGGTACAAGATACATTGAGGTTTACAGAGCAACTGCACAAGATTTCCTTAAGATAGTGAAAGGTCCTGTTGATGTCACCCAGATTGCTGCTAACTTTGTATCAAACAAAGCTGAGGTGATCATTAGAATGAGAGGACTTCCATTCAACTCAAAAGAGAGTGATGTGATTGAATTTTTTGAGGAGGATGCACCAGTATTCAAAAGTGATGAAGGAATTCTCATTGTTAGGAACAACTTTGGGAAGGCTACTGGAGATGCATTTGTTCTTTTTGAGACAGAGGAACATGGCCATGCAGCATTGAGGAAGCACAGATGCATGCTTGGCTCCCGTTATGTTGAGCTGTTCCGAAGTTCACAAAGTGAGGTTCAGCAAGTTCTAAACTCTTACAGCAATCTCATGCACAATTTTCCACCAATCATGTTTCCACCCTTGCCACATCATCCTCCCTTTCACCCACCCTTCTTAATTCCTGGGCTGGGTGTAAATGGTATGAATACCAAAGACTGTCTGCGCTTACGAGGGTTGCCGTTCTCTGCAACAGTACAAGATGTATTAGACTTCCTAAAGGAACATGCTGCATTTGTAGTTCCTGGTGGAGTTCACATGGTGTACAACACTCAGGGTCGCCCCTCTGGAGATGCATATGTCCAGTTAGTATCACCTGAATGTGCAAAATCTGCCACCACGGACTTGCACAGACAACACATGGGAGAGCGATACATTGAAGTGTTTCCCTGCTCAGGAGTAGATATTGCTGCAATTATAACCAGCAGTACAATGAACCAAAACAAGATGACCTCACCCAATAACACTCCCTACAGCCATCCATGTTCATACCCCATGACCAATGGTGTGGTCACCAGCCCTAATGGGACACATATGAATGGACACACAGACACTGTTGGAGCTGCTACATCAGCTTGTCGCAGTCCCACAGGATTGTATGTACCTCATTCACCCACATACTTCAACTGCATTATACCTCAAAATGGCATTGGTGGAGGGAATGTGAGTTATTATCCACCTGCCAGTGCAAATTTTAGGATGCGCATGTCACCATATTTGCCACAGCCCTATGAAGTGATGCCTCTCTTTCAAGGATACCAGATCGCAGACTATGGAAGGTAG

Transcript

Pocillopora_acuta_HIv2___RNAseq.g8106.t2

Protein

Uniprot

Uniprot term	Description
Q6NXG1	Epithelial splicing regulatory protein 1 OS=Homo sapiens OX=9606 GN=ESRP1 PE=1 SV=2
Q3US41	Epithelial splicing regulatory protein 1 OS=Mus musculus OX=10090 GN=Esrp1 PE=1 SV=2
B2RYD2	Epithelial splicing regulatory protein 1 OS=Rattus norvegicus OX=10116 GN=Esrp1 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR050666	Family	Epithelial Splicing Regulatory	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14947	ESRP1_2; epithelial splicing regulatory protein 1/2	-	Spliceosome	ko03041	deepkoala