Detailed information of Pocillopora_acuta_HIv2___RNAseq.g8689.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000027:1033435...1053830
NR annotation: XP_020608040.1, coatomer subunit beta'-like, partial [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
O55029Coatomer subunit beta' OS=Mus musculus OX=10090 GN=Copb2 PE=1 SV=2
O35142Coatomer subunit beta' OS=Rattus norvegicus OX=10116 GN=Copb2 PE=1 SV=3
P35605Coatomer subunit beta' OS=Bos taurus OX=9913 GN=COPB2 PE=1 SV=3
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04053Coatomer_WDADCoatomer WD associated region RepeatInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR006692DomainCoatomer, WD associated regionInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR020472RepeatG-protein beta WD-40 repeatInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR050844FamilyCoatomer complex subunitInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19876COATOMERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005198Molecular Functionstructural molecule activityInterproscan
GO:0006886Biological Processintracellular protein transportInterproscan
GO:0016192Biological Processvesicle-mediated transportInterproscan
GO:0030117Cellular Componentmembrane coatInterproscan
GO:0006888Biological Processendoplasmic reticulum to Golgi vesicle-mediated transportInterproscan
GO:0006890Biological Processretrograde vesicle-mediated transport, Golgi to endoplasmic reticulumInterproscan
GO:0006891Biological Processintra-Golgi vesicle-mediated transportInterproscan
GO:0030126Cellular ComponentCOPI vesicle coatInterproscan

TOP