Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g8806.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000008:766816...775870
NR annotation: XP_027048078.1, mucosa-associated lymphoid tissue lymphoma translocation protein 1 homolog [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___RNAseq.g8806.t1

ATGGATTCAAGGTGCATTACAGATTTGCCTGATGATATAAAAAAGCAGATAGCAGCAATACTGGACGCATCTGAACAGCCCAACTGGAAATCACTTGTCCATGAGGTTATAAGGCACAAGATACCATCATATAAGGATCCATGTCAAGTTTATGCAATTGGAATGGCAACTTTGTCACCAGGAGGAAGCCCAACTCTTAAACTATTGCAAGACTTGGGACAGTCACAAATAACTGTGAAAGTCTTTAAAAGCTGGATCAGTTCCATGAGTGAAGGGTCACCAGGCTTACAGAAAGTAACTAGTTTACTAACATTTTCTCCAACTGTAACTCAAGATGTTAAAAAAGAAATACGAGGAATTCCAGGACAGAATGTTTACATACACTGTGAAGCATTAGGACACAAACCACTTCAATTTCAATGGTTTAAAAAAAGAGAACTTCTTCAAGGGGAAACAGGAAATAAGCTAGAGCTCAAGAGTGTCAGTGAAAGTGACGGAGGATATTATACATGCCGCATCGCAAATTGTCATGGTTGTATTTTCACCAGCTGGGCCAAATTGATAATTGATGAAGACAGTGGTGCTCACAGCTCTTCACCCTTTGATTTGCCAATCATTACTTCTCAATCAGACCCTGATGTTCACATACTTCTGGGTTCACGGCTAAGCTTATACTGTGATGGTGTTGGCAGACCAGCTCCAAGCTATCAGTGGTTTCATGATGATTCTGCCATCCCGGAAGCAACACACAGATGGTTGATAAAAAACAATGTTTCTGCAGAAGATCAAGGATTTTATCATTGTAAAGTGTACAACACTGCTGGGGAAATGCATTCACACAATTTTAAAGTGACTATTGAAAGTTTGCAAGTTAATATTGACAATCTTACCACAGCCAGAGATTCCTATACACGTGGTCCACGTGATCGAGTCGCAAATAAAGTTGCCCTGTTAATTGGAAATAAAGATTACAGCAATCAACAACTCGGAAAGCTTTTTCATCCAATCAATGATGTTTTTGACTTTACAGGCAGACTTATCAATATGGGTTTCAAAGTGGTTTCATTAGTAAACCTAACACTGGAGGAGATGAGAGTAGCTCTTGCGGAGTTCTGCAAGCTTCTTGTCGAAGATACCTATGCTGTGTTCTACTTTGCTGGCCATGGTTTTGAACGCGGTGGATTAAGCTATCTAATGCCAGTCGATGCCACGCCTTTATATCATTGGCAAGAGAACATGGCTTCAGCTGAAGTACTTAAGGCCATGCAAGAAACTAAGGCAAAGTTAAAGCTTGTGTTGCTGGACTGCTGCAGAACAGAACCGGATTACGTAGCGCAGAACAGTCCATTACTTAGTGGGGATTTACAAGATATAAAAGAACCAAATGTGGTAGTAGCATTTGGCTGTTGCCCGCGTTCAAGTGTGTTTGAATGTGAGCAGGAGAAGAATGGCTTTTTCGCGAAGCACCTCCTGAAAGCTATTTCAGATGAACACAGGAATAAATCCGTCGAAGAAGTTTTGTTACATGTTAGTCGTGGTATACACGAAGAGAACCTCGTGGACTATCTTACAAATCAAAAACAGATTGTGAACAGGATAACCACTTCAGTCAAACCTATGAGTCTCTGGACCCCTGTGGACAACATCTCATTGAATCCGTCCGCTGAAGAAGCAACTGCAAAGTGGAAATCAGCTCATGAAATTCCAAATGATCCAGTTACCGTCTATCAAGATGATAAAGTGAGGGTTGAGTTGATTTTTAACGCAGAAGTGTCAAATGTCTTGATAGTGAATGCACGAGCGCTGGGAGAGGACAGCTTGGACTTAAATGTCACGTTTGAGATGTCGAATGTTGTGAGTGGATGCTGTGTCGCGCGAGGTGACATGTTGGGAAAAAAATGCCGGCCATCAGAAGCGACGTTAAAAGTCAAAGACCTTCAACGGCTTACGGGACCGTTAGTCTTTAAACTGACTTGTATATATACAGTCAACGGAGAAAGACAGCTAAAGTCGATTAGTTACACAATGGAAGAAAAACCTCTCTATGCTAAGCTGGTAACACGTTGGTGA

Transcript

Pocillopora_acuta_HIv2___RNAseq.g8806.t1

Protein

Uniprot

Uniprot term	Description
Q2TBA3	Mucosa-associated lymphoid tissue lymphoma translocation protein 1 homolog OS=Mus musculus OX=10090 GN=Malt1 PE=1 SV=2
Q9UDY8	Mucosa-associated lymphoid tissue lymphoma translocation protein 1 OS=Homo sapiens OX=9606 GN=MALT1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13895	Ig_2	Immunoglobulin domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF00656	Peptidase_C14	Caspase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR052039	Family	Caspase-related proteases and regulators	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR033540	Homologous_superfamily	MALT1, immunoglobulin-like domain superfamily	Interproscan
IPR029030	Homologous_superfamily	Caspase-like domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001309	Domain	Peptidase C14, p20 domain	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR011600	Domain	Peptidase C14, caspase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22576	MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004197	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07369	MALT1; mucosa-associated lymphoid tissue lymphoma translocation protein 1	EC:3.4.22.-	Peptidases and inhibitors	ko01002	deepkoala