Detailed information of Pocillopora_acuta_HIv2___RNAseq.g8901.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000008:1900041...1927831
NR annotation: XP_027060110.1, hemicentin-1-like [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
D3YXG0Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1
Q96RW7Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2
Q8NDA2Hemicentin-2 OS=Homo sapiens OX=9606 GN=HMCN2 PE=1 SV=4

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07679I-setImmunoglobulin I-set domainDomainInterproscan
PF07645EGF_CACalcium-binding EGF domainDomainInterproscan
PF00090TSP_1Thrombospondin type 1 domainDomainInterproscan
PF12662cEGFComplement Clr-like EGF-likeDomainInterproscan
PF07474G2FG2F domainDomainInterproscan
PF13927Ig_3Immunoglobulin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR000152PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR006605DomainG2 nidogen/fibulin G2FInterproscan
IPR013098DomainImmunoglobulin I-setInterproscan
IPR000884RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR009017Homologous_superfamilyGreen fluorescent proteinInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR036383Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR009030Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR049883DomainNOTCH1 EGF-like calcium-binding domainInterproscan
IPR013106DomainImmunoglobulin V-set domainInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR026823DomainComplement Clr-like EGF domainInterproscan
IPR051170FamilyNeural and epithelial cell adhesion domain-containing proteinInterproscan
IPR003598DomainImmunoglobulin subtype 2Interproscan
IPR009138FamilyNeural cell adhesionInterproscan
IPR003599DomainImmunoglobulin subtypeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12231CTX-RELATED TYPE I TRANSMEMBRANE PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0007155Biological Processcell adhesionInterproscan
GO:0016020Cellular ComponentmembraneInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K17341HMCN; hemicentin-Domain-containing proteins not elsewhere classifiedko04990deepkoala

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