Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g942.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000002:6548129...6549415
NR annotation: XP_027038904.1, homeobox protein Nkx-2.2a-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q90481	Homeobox protein Nkx-2.2a OS=Danio rerio OX=7955 GN=nkx2.2a PE=2 SV=1
P42587	Homeobox protein XENK-2 OS=Xenopus laevis OX=8355 PE=2 SV=1
O95096	Homeobox protein Nkx-2.2 OS=Homo sapiens OX=9606 GN=NKX2-2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR050394	Family	Homeobox NK-like transcription regulators	Interproscan
IPR020479	Domain	Homeobox domain, metazoa	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24340	HOMEOBOX PROTEIN NKX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08029	NKX2-2; homeobox protein Nkx-2.2	-	Transcription factors	ko03000	deepkoala