Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g944.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000002:6592771...6593913
NR annotation: XP_027038872.1, homeobox protein engrailed-1-B-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P50223	Homeobox protein GHOX-7 OS=Gallus gallus OX=9031 GN=GHOX-7 PE=2 SV=1
Q2VL85	Homeobox protein MSX-1 (Fragment) OS=Callimico goeldii OX=9495 GN=MSX1 PE=3 SV=1
Q2VL79	Homeobox protein MSX-1 (Fragment) OS=Daubentonia madagascariensis OX=31869 GN=MSX1 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR050674	Family	Msh Homeobox Transcriptional Regulators	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24338	HOMEOBOX PROTEIN MSX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0048598	Biological Process	embryonic morphogenesis	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan